Os09g0507400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0507400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.43 | 0.299 | 11.1 | 0.823 | 0.753 | -0.368 | -0.491 | 0.402 | 0.154 | 21.2 | 15.98 | 17 | -- | -- |
| 40.93 | 0.298 | 11.1 | 0.821 | 0.75 | -0.366 | -0.809 | -- | 0.152 | 21.3 | 15.96 | 18 | -- | -- |
| 40.92 | 0.298 | 11.1 | 0.828 | 0.753 | -0.369 | -- | 0.649 | 0.15 | 21.3 | 15.96 | 17 | -- | -- |
| 43.31 | 0.307 | 11.1 | 0.845 | 0.757 | -0.363 | -- | -- | 0.156 | 21.2 | 15.96 | 18 | -- | -- |
| 59.42 | 0.361 | 11.1 | 0.772 | -- | -0.666 | -- | 0.664 | 0.122 | -- | 5.93 | 15 | -- | -- |
| 45.55 | 0.316 | 11.1 | 0.804 | 1.02 | -- | -0.712 | -- | 0.153 | 22.1 | -- | -- | -- | -- |
| 47.56 | 0.323 | 11.1 | 0.831 | 1.02 | -- | -- | -- | 0.154 | 22.1 | -- | -- | -- | -- |
| 61.29 | 0.365 | 11.1 | 0.803 | -- | -0.687 | -- | -- | 0.175 | -- | 5.913 | 10 | -- | -- |
| 61.75 | 0.368 | 11.2 | -- | 0.72 | -0.349 | -- | -- | 0.0407 | 21.2 | 9.3 | 22 | -- | -- |
| 110.3 | 0.491 | 11.1 | 0.845 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 65.78 | 0.379 | 11.2 | -- | 1.02 | -- | -- | -- | 0.0618 | 22.2 | -- | -- | -- | -- |
| 78.24 | 0.412 | 11.1 | -- | -- | -0.709 | -- | -- | 0.102 | -- | 7.534 | 10 | -- | -- |
| 129.14 | 0.53 | 11.1 | -- | -- | -- | -- | -- | 0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.33 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 2 | 39.34 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 12 | 39.80 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 16 | 39.90 | radiation | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 23 | 40.03 | radiation | 30 | 10 | < th | dose independent | rect. | 13 | 22 |
| 27 | 40.07 | radiation | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 52 | 40.40 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 53 | 40.40 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 63 | 40.50 | radiation | 1 | 10 | > th | dose dependent | sin | 4 | NA |
| 70 | 40.58 | radiation | 10 | 10 | > th | dose independent | sin | 1 | NA |
| 83 | 40.67 | radiation | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 101 | 40.76 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 103 | 40.76 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 110 | 40.81 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 116 | 40.83 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 119 | 40.85 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 10 |
| 122 | 40.86 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 12 |
| 125 | 40.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 139 | 40.94 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 147 | 40.98 | radiation | 20 | 30 | < th | dose independent | sin | 3 | NA |
| 149 | 40.98 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 163 | 41.02 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 164 | 41.03 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 9 |
| 170 | 41.04 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 182 | 41.05 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 194 | 41.06 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 200 | 41.07 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 205 | 41.08 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 208 | 41.08 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 258 | 41.08 | radiation | 1 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 265 | 41.09 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 11 |
| 267 | 41.09 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 293 | 41.11 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 6 |
| 328 | 41.13 | radiation | 1 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 451 | 41.22 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 470 | 41.26 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 471 | 41.26 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 4 |
| 560 | 41.27 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 564 | 41.28 | radiation | 10 | 10 | > th | dose independent | rect. | 14 | 23 |
| 595 | 41.29 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 602 | 41.30 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 21 |
| 641 | 41.37 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 19 |
| 643 | 41.37 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 650 | 41.38 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 651 | 41.39 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 7 |
| 657 | 41.40 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 682 | 41.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 4 |
| 691 | 41.47 | radiation | 30 | 10 | < th | dose independent | rect. | 23 | 12 |
| 714 | 41.49 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 715 | 41.49 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 5 |
| 747 | 41.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 885 | 41.52 | radiation | 20 | 30 | < th | dose independent | no | NA | NA |
| 887 | 41.52 | humidity | 60 | 90 | > th | dose independent | rect. | 12 | 23 |
| 893 | 41.53 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 912 | 41.54 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 1 |