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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0507200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MADS box protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0206) R2 : 0.00353
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0551 (0.0433) R2dN8 : 0.00456 R2N8 : 0.00353
σ : 0.388
deviance : 68.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.37 0.38 2.97 0.0505 0.186 3.7 -0.0438 7.65 0.0573 7.47 1015 1531 -- --
66.96 0.384 2.94 0.00672 0.193 0.0449 0.0231 -- 0.0538 7.66 1015 1531 -- --
65.37 0.377 2.97 0.0504 0.185 3.72 -- 7.68 0.0573 7.52 1015 1532 -- --
66.52 0.38 2.94 0.0285 0.191 0.254 -- -- 0.0614 7.52 1014 2293 -- --
67.19 0.382 2.97 0.0577 -- 3.84 -- 7.85 0.0605 -- 1015 1547 -- --
66.97 0.384 2.94 0.00679 0.192 -- 0.0208 -- 0.0533 7.63 -- -- -- --
66.97 0.383 2.94 0.00725 0.192 -- -- -- 0.0533 7.6 -- -- -- --
68.54 0.386 2.94 0.024 -- 0.264 -- -- 0.0663 -- 1014 2117 -- --
66.52 0.38 2.94 -- 0.195 0.249 -- -- 0.0613 7.47 1014 2296 -- --
68.95 0.388 2.95 0.00995 -- -- -- -- 0.0562 -- -- -- -- --
66.97 0.383 2.94 -- 0.192 -- -- -- 0.0525 7.6 -- -- -- --
68.55 0.386 2.94 -- -- 0.258 -- -- 0.0633 -- 1014 2117 -- --
68.96 0.388 2.95 -- -- -- -- -- 0.0551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.94 wind 7.0 10 > th dose dependent rect. 9 1
6 62.01 radiation 10.0 90 < th dose dependent rect. 8 2
23 63.10 wind 7.0 10 > th dose independent rect. 9 1
46 63.79 humidity 80.0 10 > th dose independent rect. 8 2
61 63.93 radiation 10.0 90 < th dose independent rect. 8 2
63 63.97 radiation 10.0 10 < th dose independent rect. 9 1
102 64.40 radiation 1.0 30 > th dose dependent rect. 18 12
105 64.46 humidity 90.0 30 > th dose independent rect. 2 1
106 64.46 temperature 20.0 30 > th dose dependent rect. 2 1
107 64.46 humidity 80.0 30 > th dose dependent rect. 2 1
108 64.47 wind 9.0 1440 < th dose independent rect. 21 1
112 64.48 wind 5.0 30 < th dose dependent rect. 2 1
116 64.48 humidity 50.0 30 > th dose dependent rect. 2 1
120 64.49 wind 5.0 30 < th dose independent rect. 2 1
123 64.49 atmosphere 995.0 30 > th dose dependent rect. 2 1
126 64.50 temperature 10.0 30 > th dose independent rect. 2 1
129 64.50 temperature 30.0 30 < th dose independent rect. 2 1
130 64.50 humidity 50.0 30 > th dose independent rect. 2 1
133 64.50 atmosphere 995.0 30 > th dose independent rect. 2 1
135 64.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
137 64.50 radiation 1.0 30 < th dose independent rect. 2 1
142 64.50 precipitation 0.1 30 < th dose independent rect. 2 1
144 64.50 temperature 10.0 30 > th dose independent rect. 3 23
146 64.50 radiation 1.0 30 < th dose dependent rect. 2 1
151 64.50 precipitation 0.1 30 < th dose dependent rect. 2 1
154 64.51 radiation 1.0 30 > th dose dependent rect. 5 1
176 64.55 temperature 15.0 1440 > th dose independent rect. 21 1
178 64.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
180 64.57 wind 3.0 90 > th dose independent rect. 4 1
198 64.63 wind 5.0 90 > th dose independent rect. 4 6
199 64.64 temperature 30.0 30 < th dose dependent rect. 2 1
204 64.69 humidity 70.0 4320 > th dose independent rect. 21 1
205 64.69 temperature 15.0 30 > th dose independent rect. 21 23
208 64.69 radiation 30.0 90 < th dose dependent rect. 19 16
211 64.71 wind 1.0 30 > th dose independent rect. 2 1
215 64.72 radiation 20.0 4320 < th dose dependent rect. 21 1
218 64.73 humidity 80.0 30 > th dose independent rect. 20 1
233 64.74 humidity 90.0 30 < th dose independent rect. 20 1
239 64.75 wind 1.0 30 > th dose independent rect. 20 1
240 64.75 wind 5.0 30 < th dose independent rect. 20 1
243 64.75 temperature 10.0 30 > th dose independent rect. 20 1
248 64.75 temperature 30.0 30 < th dose independent rect. 20 1
249 64.75 temperature 30.0 1440 < th dose independent rect. 21 1
253 64.75 humidity 50.0 30 > th dose independent rect. 20 1
256 64.75 humidity 50.0 1440 > th dose independent rect. 21 1
262 64.75 atmosphere 995.0 30 > th dose independent rect. 20 1
264 64.75 atmosphere 995.0 1440 > th dose independent rect. 21 1
265 64.75 atmosphere 1010.0 30 < th dose independent rect. 20 1
267 64.75 radiation 1.0 30 < th dose independent rect. 20 1
272 64.75 radiation 1.0 1440 < th dose independent rect. 21 1
292 64.75 precipitation 0.1 30 < th dose independent rect. 20 1
294 64.75 temperature 10.0 1440 > th dose independent rect. 22 23
297 64.75 wind 3.0 90 > th dose dependent rect. 4 1
298 64.75 wind 7.0 30 < th dose dependent rect. 20 1
300 64.75 temperature 30.0 30 < th dose dependent rect. 20 1
301 64.75 humidity 50.0 30 > th dose dependent rect. 20 1
304 64.75 radiation 1.0 30 < th dose dependent rect. 20 1
313 64.75 precipitation 0.1 30 < th dose dependent rect. 20 1
320 64.76 temperature 10.0 30 > th dose dependent rect. 20 1
321 64.76 atmosphere 995.0 30 > th dose dependent rect. 20 1
325 64.77 temperature 25.0 30 > th dose independent rect. 20 1
329 64.77 atmosphere 1015.0 30 < th dose dependent rect. 20 1
332 64.78 wind 1.0 30 > th dose dependent rect. 20 1
349 64.79 radiation 1.0 90 > th dose independent rect. 5 1
350 64.79 wind 9.0 30 < th dose independent rect. 21 23
362 64.82 humidity 90.0 30 < th dose dependent rect. 20 1
454 64.93 radiation 20.0 90 < th dose independent rect. 19 16
491 64.96 precipitation 0.1 14400 > th dose dependent rect. 16 2
494 64.96 radiation 30.0 90 < th dose dependent rect. 19 19
533 65.07 precipitation 0.1 14400 > th dose dependent rect. 17 4
539 65.09 atmosphere 1015.0 1440 < th dose independent rect. 8 3
568 65.12 precipitation 0.1 14400 < th dose independent rect. 16 2
570 65.12 precipitation 0.1 30 > th dose independent rect. 4 10
575 65.12 precipitation 0.1 14400 < th dose dependent rect. 16 2
576 65.13 precipitation 0.1 14400 > th dose independent rect. 16 2
581 65.13 precipitation 0.1 90 > th dose dependent rect. 4 3
583 65.14 wind 3.0 10 > th dose independent rect. 6 1
584 65.14 precipitation 0.1 90 > th dose independent rect. 4 3
597 65.14 wind 3.0 10 > th dose dependent rect. 6 1
599 65.14 precipitation 0.1 30 > th dose dependent rect. 5 9
607 65.15 atmosphere 1015.0 1440 < th dose independent rect. 10 1
641 65.15 precipitation 0.1 10 > th dose dependent rect. 5 3
671 65.16 atmosphere 1015.0 1440 < th dose independent rect. 4 7
679 65.17 precipitation 0.1 14400 > th dose independent rect. 17 4
684 65.17 precipitation 0.1 14400 > th dose independent rect. 5 20
685 65.17 precipitation 0.1 14400 < th dose independent rect. 5 20
706 65.17 precipitation 0.1 14400 < th dose dependent rect. 5 20
711 65.18 atmosphere 1015.0 1440 < th dose independent rect. 24 11
712 65.18 precipitation 0.1 14400 > th dose independent rect. 5 18
713 65.18 precipitation 0.1 14400 < th dose independent rect. 5 18
714 65.18 radiation 20.0 90 < th dose independent rect. 19 19
722 65.18 wind 3.0 90 > th dose dependent rect. 4 6
724 65.18 atmosphere 1015.0 1440 > th dose dependent rect. 24 11
726 65.18 precipitation 0.1 14400 < th dose dependent rect. 5 18
731 65.19 atmosphere 1015.0 1440 > th dose independent rect. 10 1
751 65.19 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
787 65.20 atmosphere 1010.0 270 > th dose dependent rect. 24 6
792 65.20 precipitation 0.1 14400 > th dose dependent rect. 5 19
801 65.21 precipitation 0.1 14400 > th dose independent rect. 7 16
814 65.21 wind 1.0 30 > th dose independent rect. 21 23
824 65.21 precipitation 0.1 14400 > th dose dependent rect. 9 12
834 65.22 precipitation 0.1 14400 < th dose independent rect. 9 13
835 65.22 precipitation 0.1 14400 > th dose independent rect. 8 14
860 65.22 precipitation 0.1 14400 < th dose dependent rect. 9 13
874 65.23 precipitation 0.1 14400 > th dose independent sin 21 NA
875 65.23 precipitation 0.1 14400 < th dose independent sin 20 NA
881 65.23 atmosphere 1015.0 1440 > th dose independent rect. 24 11
882 65.23 precipitation 0.1 14400 > th dose independent rect. 9 12
901 65.23 precipitation 0.1 14400 > th dose dependent sin 20 NA
903 65.23 precipitation 0.1 14400 < th dose dependent sin 20 NA
915 65.23 precipitation 0.1 14400 > th dose dependent rect. 8 16
951 65.24 atmosphere 1010.0 270 > th dose dependent rect. 5 1
991 65.25 atmosphere 1015.0 1440 < th dose independent rect. 14 4