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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0506000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diphosphonucleotide phosphatase 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.041) R2 : 0.568
β1 : -1.14 (0.154) R2dD : 0.0613 R2D : 0.0791
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.85 (0.209) R2dE : 0.358 R2E : 0.452
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.68 (0.0895) R2dN8 : 0.0769 R2N8 : 0.0892
σ : 0.763
deviance : 268.38
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.67
memory length : 1615
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.68 0.726 5.23 -1.66 1.54 4.41 1.45 5.98 -0.792 0.87 0.36 1428 -- --
249.16 0.735 5.12 -1.09 1.28 3.09 1.18 -- -0.675 1.13 0.5826 1450 -- --
245.43 0.73 5.23 -1.71 1.27 4.48 -- 6.09 -0.81 1.11 0.3716 1455 -- --
255.32 0.744 5.14 -1.19 1.31 2.98 -- -- -0.709 0.974 0.5978 1448 -- --
260.28 0.751 5.17 -1.45 -- 4.84 -- 4.96 -0.688 -- 0.4698 1572 -- --
346.76 0.873 5.22 -1.91 1.38 -- 0.928 -- -1.08 0.913 -- -- -- --
350.38 0.877 5.22 -1.94 1.38 -- -- -- -1.08 0.877 -- -- -- --
268.38 0.763 5.12 -1.14 -- 3.85 -- -- -0.68 -- 0.67 1615 -- --
287.63 0.79 5.09 -- 1.27 3.63 -- -- -0.514 0.956 0.5744 1450 -- --
469.08 1.01 5.2 -1.89 -- -- -- -- -1.06 -- -- -- -- --
449.67 0.992 5.17 -- 1.35 -- -- -- -0.865 0.814 -- -- -- --
300.2 0.807 5.06 -- -- 4.41 -- -- -0.474 -- 0.5981 1587 -- --
563.32 1.11 5.15 -- -- -- -- -- -0.846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.23 radiation 20 43200 < th dose dependent rect. 22 9
6 214.29 radiation 20 43200 < th dose dependent rect. 19 12
7 214.30 radiation 20 43200 < th dose dependent rect. 3 4
11 214.34 radiation 40 43200 < th dose dependent rect. 22 9
34 214.71 radiation 40 43200 < th dose dependent rect. 17 15
42 215.25 radiation 1 43200 > th dose dependent rect. 17 15
55 215.81 radiation 30 43200 > th dose dependent rect. 8 1
57 215.84 radiation 10 43200 < th dose dependent sin 10 NA
69 215.99 radiation 1 43200 > th dose dependent rect. 4 3
80 216.21 radiation 10 43200 < th dose independent rect. 17 19
119 216.37 radiation 10 43200 < th dose independent rect. 15 21
153 216.68 radiation 40 43200 < th dose dependent rect. 16 17
165 216.91 radiation 30 43200 > th dose independent rect. 7 2
197 217.17 radiation 30 43200 > th dose dependent rect. 14 20
209 217.36 radiation 10 43200 < th dose independent sin 9 NA
211 217.36 radiation 10 43200 < th dose independent rect. 11 20
214 217.41 radiation 10 43200 < th dose independent rect. 9 22
218 217.44 radiation 1 43200 > th dose dependent sin 12 NA
219 217.44 radiation 30 43200 > th dose dependent sin 12 NA
244 217.62 radiation 10 43200 < th dose independent rect. 3 9
245 217.62 radiation 10 43200 < th dose independent rect. 1 11
276 217.73 radiation 10 43200 < th dose independent rect. 11 23
295 217.89 radiation 40 43200 < th dose independent rect. 8 1
296 217.89 radiation 20 43200 < th dose independent rect. 22 8
315 217.93 radiation 40 43200 < th dose dependent sin 12 NA
318 217.95 radiation 10 43200 < th dose independent rect. 14 16
320 217.97 radiation 10 43200 < th dose independent rect. 23 20
327 217.98 radiation 10 43200 < th dose independent no NA NA
328 217.98 radiation 10 43200 < th dose independent rect. 4 15
389 218.10 radiation 10 43200 < th dose independent sin 15 NA
459 218.45 radiation 30 43200 < th dose independent rect. 14 19
496 218.66 radiation 30 43200 < th dose independent rect. 14 1
497 218.69 humidity 60 43200 < th dose independent rect. 11 1
498 218.70 radiation 1 43200 > th dose independent rect. 4 1
556 218.95 radiation 1 43200 < th dose independent rect. 2 3
560 219.00 radiation 10 43200 < th dose independent rect. 18 6
562 219.02 radiation 1 43200 < th dose independent rect. 4 1
584 219.07 radiation 10 43200 < th dose independent rect. 14 5
586 219.07 radiation 10 43200 < th dose independent rect. 14 11
595 219.08 radiation 10 43200 < th dose independent rect. 14 9
599 219.09 humidity 60 43200 < th dose independent rect. 10 3
601 219.12 radiation 40 43200 < th dose independent sin 12 NA
602 219.12 wind 7 43200 < th dose independent rect. 14 1
604 219.14 radiation 10 43200 < th dose independent rect. 18 3
606 219.15 radiation 30 43200 < th dose independent rect. 16 17
613 219.21 radiation 10 43200 < th dose independent rect. 18 1
614 219.21 radiation 30 43200 < th dose independent rect. 22 11
623 219.25 radiation 30 43200 < th dose independent rect. 19 14
624 219.26 radiation 30 43200 < th dose independent rect. 6 3
625 219.26 radiation 30 43200 < th dose independent rect. 3 6
633 219.27 wind 1 43200 < th dose dependent rect. 18 8
638 219.32 radiation 10 43200 < th dose independent rect. 18 11
657 219.44 radiation 10 43200 < th dose independent rect. 18 9
667 219.57 radiation 1 43200 < th dose independent rect. 20 9
685 219.62 radiation 1 43200 < th dose independent rect. 22 7
724 219.80 radiation 10 43200 < th dose independent rect. 11 8
728 219.80 radiation 10 43200 < th dose independent rect. 11 15
783 220.01 humidity 60 43200 > th dose independent rect. 10 2
874 220.29 wind 7 43200 > th dose independent rect. 14 1
878 220.35 radiation 10 43200 < th dose independent rect. 9 11