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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0503000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase superfamily, zinc-containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.43 (0.0516) R2 : 0.469
β1 : -1.34 (0.187) R2dD : 0.0633 R2D : -0.0324
β2 : 1.28 (0.126) R2dC : 0.123 R2C : -0.017
β3 : 2.63 (0.223) R2dE : 0.204 R2E : -0.0981
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.85 (0.118) R2dN8 : 0.458 R2N8 : 0.0658
σ : 0.945
deviance : 411.4
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_____
C
peak time of C : 9.15
E
wheather : humidity
threshold : 70.27
memory length : 7680
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
401.47 0.941 9.4 -1.2 1.12 2.61 0.837 2.95 -1.58 9.67 68 7395 -- --
410.35 0.943 9.43 -1.36 1.28 2.62 0.552 -- -1.85 9.23 70.14 7675 -- --
402.52 0.934 9.41 -1.13 1.23 2.56 -- 2.82 -1.61 9.32 68.36 7660 -- --
411.4 0.945 9.43 -1.34 1.28 2.63 -- -- -1.85 9.15 70.27 7680 -- --
476.46 1.02 9.42 -1.2 -- 2.64 -- 2.68 -1.56 -- 68.62 7301 -- --
533.38 1.08 9.31 -1.67 1.09 -- 0.639 -- -1.28 9.76 -- -- -- --
534.92 1.08 9.31 -1.64 1.09 -- -- -- -1.28 9.7 -- -- -- --
485.3 1.03 9.44 -1.36 -- 2.69 -- -- -1.73 -- 69.2 7309 -- --
456.62 0.995 9.42 -- 1.37 2.92 -- -- -1.83 9.2 72 7780 -- --
605.97 1.15 9.34 -1.65 -- -- -- -- -1.28 -- -- -- -- --
606.15 1.15 9.27 -- 1.1 -- -- -- -1.1 9.81 -- -- -- --
528.98 1.07 9.48 -- -- 2.7 -- -- -1.72 -- 70.1 8790 -- --
678.11 1.22 9.29 -- -- -- -- -- -1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.80 precipitation 0.1 14400 > th dose independent rect. 16 1
2 394.95 precipitation 0.1 14400 < th dose independent rect. 16 1
3 394.95 precipitation 0.1 14400 < th dose dependent rect. 16 1
4 394.95 precipitation 0.1 14400 > th dose dependent rect. 15 2
17 399.99 precipitation 0.1 14400 < th dose independent rect. 13 7
18 399.99 precipitation 0.1 14400 < th dose dependent rect. 13 7
19 400.15 precipitation 0.1 14400 > th dose independent rect. 13 7
20 400.67 precipitation 0.1 14400 < th dose independent rect. 15 5
21 400.67 precipitation 0.1 14400 < th dose dependent rect. 15 5
22 400.87 precipitation 0.1 14400 > th dose independent rect. 15 5
36 402.10 humidity 90.0 14400 > th dose dependent rect. 9 1
50 404.11 precipitation 0.1 14400 > th dose dependent rect. 2 18
58 404.53 precipitation 0.1 14400 < th dose independent rect. 3 16
59 404.53 precipitation 0.1 14400 < th dose dependent rect. 3 16
63 404.57 precipitation 0.1 4320 > th dose dependent rect. 1 16
65 404.63 precipitation 0.1 14400 > th dose independent rect. 3 17
67 404.82 wind 3.0 14400 < th dose dependent rect. 24 5
88 406.06 precipitation 0.1 4320 < th dose independent rect. 1 16
89 406.06 precipitation 0.1 4320 < th dose dependent rect. 1 16
90 406.19 precipitation 0.1 4320 > th dose independent rect. 1 16
121 407.35 precipitation 0.1 14400 > th dose dependent sin 2 NA
141 407.89 precipitation 0.1 14400 > th dose dependent rect. 13 7
172 409.02 precipitation 0.1 14400 < th dose independent sin 0 NA
173 409.02 precipitation 0.1 14400 < th dose dependent sin 0 NA
174 409.07 precipitation 0.1 14400 > th dose independent sin 0 NA
195 409.42 humidity 80.0 14400 < th dose independent rect. 10 1
197 409.46 humidity 80.0 14400 > th dose independent rect. 10 1
198 409.51 precipitation 0.1 14400 > th dose dependent rect. 7 13
216 409.96 humidity 90.0 14400 < th dose dependent rect. 12 3
220 410.06 humidity 90.0 14400 < th dose dependent rect. 11 7
272 411.03 precipitation 0.1 14400 > th dose dependent rect. 4 13
300 411.57 humidity 60.0 14400 > th dose independent rect. 15 1
316 411.85 humidity 50.0 14400 > th dose dependent rect. 9 9
337 412.19 wind 3.0 43200 < th dose independent rect. 5 2
339 412.26 humidity 70.0 14400 > th dose independent rect. 17 1
346 412.37 wind 3.0 14400 < th dose independent rect. 24 1
362 412.81 humidity 50.0 14400 > th dose dependent rect. 11 4
406 413.47 precipitation 0.1 14400 > th dose dependent rect. 19 1
412 413.57 humidity 60.0 14400 > th dose independent rect. 13 4
448 414.09 precipitation 0.1 14400 > th dose dependent rect. 13 19
451 414.15 precipitation 0.1 14400 > th dose dependent rect. 13 17
465 414.35 precipitation 0.1 14400 > th dose independent rect. 19 1
491 414.65 wind 1.0 4320 > th dose independent rect. 17 2
508 414.81 precipitation 0.1 14400 > th dose dependent rect. 9 21
522 414.90 wind 3.0 43200 > th dose independent rect. 5 2
533 414.99 precipitation 0.1 14400 > th dose dependent rect. 7 23
538 415.02 humidity 60.0 14400 < th dose independent rect. 13 3
561 415.11 humidity 90.0 14400 > th dose dependent rect. 7 3
565 415.14 humidity 60.0 14400 < th dose independent rect. 12 5
566 415.14 humidity 50.0 14400 > th dose dependent rect. 16 1
574 415.23 precipitation 0.1 14400 > th dose dependent rect. 15 23
575 415.24 precipitation 0.1 14400 > th dose dependent no NA NA
580 415.26 precipitation 0.1 14400 < th dose independent rect. 19 1
582 415.26 precipitation 0.1 14400 < th dose dependent rect. 19 1
588 415.32 precipitation 0.1 4320 > th dose independent sin 3 NA
591 415.34 precipitation 0.1 4320 < th dose independent sin 3 NA
592 415.34 precipitation 0.1 4320 < th dose dependent sin 3 NA
602 415.42 humidity 80.0 14400 > th dose independent rect. 8 7
641 415.81 humidity 60.0 14400 > th dose independent rect. 12 21
658 415.97 humidity 90.0 14400 > th dose independent rect. 19 2
661 415.99 humidity 60.0 14400 > th dose independent rect. 13 12
666 416.00 humidity 60.0 14400 > th dose independent rect. 13 17
672 416.02 humidity 60.0 14400 > th dose independent rect. 13 8
695 416.19 humidity 90.0 14400 < th dose dependent rect. 16 1
723 416.28 humidity 90.0 14400 < th dose dependent sin 23 NA
751 416.51 humidity 70.0 14400 < th dose dependent rect. 16 1
753 416.52 humidity 60.0 14400 < th dose independent rect. 12 21
755 416.55 humidity 60.0 14400 > th dose independent sin 15 NA
771 416.68 humidity 60.0 14400 < th dose independent rect. 12 10
861 417.18 humidity 80.0 14400 > th dose independent rect. 8 10
876 417.26 humidity 50.0 14400 > th dose dependent sin 23 NA
903 417.35 precipitation 0.1 14400 > th dose independent rect. 13 17
912 417.41 precipitation 0.1 14400 < th dose independent rect. 13 17
914 417.41 precipitation 0.1 14400 < th dose dependent rect. 13 17
929 417.48 humidity 70.0 14400 < th dose independent rect. 17 1
948 417.55 precipitation 0.1 14400 > th dose independent rect. 13 19
951 417.56 precipitation 0.1 14400 < th dose independent rect. 13 19
953 417.56 precipitation 0.1 14400 < th dose dependent rect. 13 19
1000 417.71 precipitation 0.1 14400 > th dose dependent rect. 19 23