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Os09g0502800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.88 (0.0236) R2 : 0.00241
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0521 (0.0497) R2dN8 : 0.00311 R2N8 : 0.00241
σ : 0.444
deviance : 90.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.62 0.363 6.87 0.493 0.36 0.461 -1.31 0.648 -0.0512 23.5 20.1 638 -- --
61.21 0.364 6.88 0.523 0.377 0.393 -1.14 -- -0.0537 23.4 20.3 660 -- --
66.04 0.378 6.88 0.485 0.39 0.386 -- 0.183 -0.0436 22.5 20.5 705 -- --
66.02 0.378 6.89 0.463 0.379 0.363 -- -- -0.0638 22.6 20.4 716 -- --
74.6 0.402 6.89 0.45 -- 0.489 -- 0.152 -0.0655 -- 20.4 722 -- --
64.77 0.377 6.87 0.525 0.415 -- -1.16 -- 0.00414 23.3 -- -- -- --
70.03 0.392 6.87 0.576 0.434 -- -- -- 0.0109 22.4 -- -- -- --
74.3 0.401 6.89 0.387 -- 0.514 -- -- -0.0978 -- 20.24 837 -- --
70.53 0.391 6.89 -- 0.327 0.436 -- -- -0.128 22.4 20.4 940 -- --
81.58 0.422 6.86 0.583 -- -- -- -- 0.0126 -- -- -- -- --
78.76 0.415 6.89 -- 0.438 -- -- -- -0.0532 22.5 -- -- -- --
77.69 0.411 6.9 -- -- 0.655 -- -- -0.161 -- 20.15 892 -- --
90.54 0.444 6.88 -- -- -- -- -- -0.0521 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.89 temperature 20 720 > th dose independent rect. 3 21
2 57.99 temperature 10 720 > th dose dependent rect. 4 5
5 58.17 temperature 30 720 < th dose dependent rect. 24 5
6 58.21 temperature 30 720 < th dose dependent rect. 24 10
11 58.26 temperature 10 720 > th dose dependent rect. 21 19
12 58.27 temperature 20 720 > th dose independent rect. 4 5
13 58.29 temperature 20 720 > th dose independent rect. 21 20
16 58.31 temperature 20 720 > th dose independent rect. 5 2
18 58.32 temperature 15 720 > th dose dependent rect. 5 2
21 58.35 temperature 25 720 < th dose independent rect. 24 11
26 58.43 temperature 20 270 > th dose independent rect. 4 13
28 58.45 temperature 30 720 < th dose dependent rect. 1 2
30 58.46 atmosphere 1000 270 > th dose independent rect. 6 23
38 58.49 temperature 10 270 > th dose dependent rect. 4 13
65 58.63 temperature 25 30 < th dose independent rect. 16 16
70 58.65 atmosphere 1000 720 > th dose independent rect. 17 19
92 58.73 atmosphere 1000 720 > th dose independent rect. 17 17
98 58.76 temperature 20 720 > th dose independent rect. 1 15
102 58.77 atmosphere 1000 720 > th dose independent rect. 17 12
108 58.79 temperature 20 720 > th dose independent sin 4 NA
140 58.93 temperature 30 720 < th dose dependent sin 7 NA
149 58.95 atmosphere 1000 720 > th dose independent rect. 22 7
155 58.97 temperature 25 270 < th dose independent rect. 15 15
158 58.99 temperature 10 720 > th dose dependent sin 5 NA
233 59.22 atmosphere 1000 720 > th dose independent sin 10 NA
236 59.22 atmosphere 1000 270 > th dose independent rect. 10 23
240 59.23 atmosphere 1000 270 > th dose independent rect. 23 13
255 59.25 atmosphere 1010 90 < th dose dependent rect. 13 20
293 59.29 atmosphere 1010 10 < th dose dependent rect. 14 19
295 59.30 atmosphere 1000 270 > th dose independent sin 6 NA
310 59.33 temperature 30 10 < th dose dependent rect. 16 17
368 59.43 temperature 25 720 < th dose independent sin 6 NA
376 59.44 temperature 25 4320 < th dose independent rect. 3 1
377 59.44 temperature 25 720 < th dose independent rect. 15 7
413 59.49 temperature 25 4320 < th dose independent rect. 1 3
429 59.50 temperature 15 270 > th dose dependent rect. 3 21
443 59.52 temperature 20 720 < th dose independent rect. 1 4
448 59.52 temperature 25 4320 > th dose dependent rect. 24 1
455 59.53 atmosphere 1000 10 > th dose independent sin 4 NA
470 59.54 atmosphere 1010 30 < th dose dependent rect. 5 4
479 59.56 temperature 25 4320 < th dose independent rect. 1 1
494 59.57 atmosphere 1000 10 > th dose independent rect. 16 17
524 59.60 temperature 20 720 < th dose independent rect. 3 2
533 59.61 temperature 25 4320 > th dose independent rect. 23 5
544 59.62 temperature 25 4320 > th dose independent rect. 24 3
569 59.63 atmosphere 1015 90 < th dose dependent rect. 23 10
574 59.64 temperature 25 720 < th dose independent sin 16 NA
594 59.65 atmosphere 995 720 > th dose dependent rect. 17 11
602 59.66 temperature 20 720 < th dose independent rect. 19 18
606 59.66 atmosphere 1010 270 < th dose dependent rect. 3 3
690 59.71 temperature 30 270 < th dose dependent rect. 23 21
735 59.75 atmosphere 995 14400 > th dose independent rect. 10 5
748 59.76 temperature 20 720 > th dose independent no NA NA
797 59.78 temperature 20 720 < th dose independent rect. 19 11
802 59.78 temperature 20 720 < th dose independent rect. 7 23
807 59.79 temperature 20 720 < th dose independent rect. 21 9
839 59.80 temperature 20 720 < th dose independent rect. 1 22
861 59.81 temperature 20 720 < th dose independent rect. 3 20
870 59.82 atmosphere 1000 720 > th dose independent rect. 24 3
926 59.84 radiation 40 270 < th dose dependent rect. 9 1
934 59.85 radiation 40 1440 < th dose independent rect. 16 11
970 59.86 wind 9 14400 > th dose dependent rect. 10 4
975 59.87 wind 9 14400 > th dose independent rect. 10 4
996 59.88 temperature 20 720 < th dose independent no NA NA