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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0502600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0278) R2 : 0.0148
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.153 (0.0586) R2dN8 : 0.019 R2N8 : 0.0148
σ : 0.524
deviance : 126.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.53 0.503 3.42 -0.192 0.325 0.766 -0.806 -0.299 0.0813 2.69 25.21 11 -- --
114.56 0.499 3.41 -0.158 0.322 0.743 -0.758 -- 0.0899 2.67 25.2 10 -- --
116.28 0.502 3.41 -0.0684 0.318 0.715 -- 0.641 0.114 2.24 25.1 10 -- --
116.45 0.503 3.41 -0.148 0.337 0.794 -- -- 0.0913 2.21 25.2 10 -- --
120.4 0.511 3.39 0.0357 -- 0.404 -- 1.16 0.161 -- 25.5 9 -- --
122.35 0.519 3.4 -0.0413 0.0255 -- -1.15 -- 0.143 3.91 -- -- -- --
125.96 0.526 3.4 -0.0264 0.0681 -- -- -- 0.15 22.6 -- -- -- --
120.65 0.512 3.4 -0.0861 -- 0.528 -- -- 0.138 -- 26.4 9 -- --
116.98 0.504 3.41 -- 0.315 0.764 -- -- 0.12 2.15 25.5 10 -- --
126.24 0.525 3.4 -0.0251 -- -- -- -- 0.15 -- -- -- -- --
125.98 0.525 3.4 -- 0.0679 -- -- -- 0.153 22.6 -- -- -- --
120.85 0.512 3.4 -- -- 0.513 -- -- 0.149 -- 26.4 9 -- --
126.26 0.524 3.4 -- -- -- -- -- 0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.33 temperature 15 90 > th dose dependent rect. 6 20
2 113.36 temperature 15 30 > th dose dependent rect. 8 18
11 113.54 temperature 15 10 > th dose dependent rect. 6 22
12 113.57 temperature 25 90 > th dose dependent rect. 17 23
13 113.59 temperature 15 270 > th dose dependent rect. 6 18
48 114.12 temperature 25 10 > th dose dependent rect. 17 23
57 114.21 temperature 25 270 > th dose dependent rect. 17 21
63 114.31 temperature 25 10 > th dose dependent rect. 8 23
72 114.38 temperature 25 10 > th dose dependent rect. 23 23
77 114.42 radiation 10 30 < th dose independent rect. 6 1
85 114.50 temperature 20 30 > th dose dependent rect. 8 14
92 114.52 atmosphere 1010 30 < th dose independent rect. 6 1
97 114.53 temperature 25 10 > th dose dependent rect. 6 16
110 114.58 temperature 25 10 > th dose dependent rect. 3 22
113 114.59 temperature 25 10 > th dose dependent no NA NA
117 114.60 temperature 25 30 > th dose dependent rect. 6 1
168 114.73 temperature 25 10 > th dose dependent rect. 21 23
197 114.81 temperature 25 10 > th dose dependent rect. 13 23
233 114.88 temperature 25 10 > th dose dependent rect. 10 23
264 114.96 temperature 25 90 > th dose dependent sin 0 NA
388 115.22 temperature 30 720 < th dose independent rect. 11 1
394 115.24 temperature 30 90 < th dose dependent rect. 10 9
452 115.40 temperature 30 90 < th dose independent rect. 11 8
469 115.42 temperature 15 30 > th dose dependent rect. 23 23
470 115.43 temperature 30 270 < th dose independent rect. 2 15
474 115.44 temperature 30 10 < th dose dependent rect. 11 9
505 115.58 temperature 10 10 > th dose dependent sin 20 NA
511 115.61 temperature 30 720 < th dose independent rect. 3 8
544 115.69 wind 1 270 < th dose dependent rect. 24 1
565 115.72 temperature 30 30 < th dose dependent rect. 11 21
594 115.80 temperature 25 720 > th dose dependent rect. 5 6
600 115.80 temperature 30 10 < th dose dependent rect. 2 22
629 115.87 wind 1 30 > th dose dependent rect. 6 1
633 115.88 temperature 25 720 > th dose dependent rect. 8 3
664 115.92 temperature 10 270 > th dose dependent rect. 16 23
678 115.95 temperature 30 90 < th dose dependent rect. 3 20
727 116.06 temperature 30 720 < th dose independent rect. 7 6
734 116.08 temperature 25 720 > th dose dependent rect. 10 1
741 116.10 temperature 25 90 > th dose dependent rect. 23 17
744 116.11 radiation 1 1440 > th dose independent rect. 12 1
745 116.11 temperature 30 10 < th dose dependent sin 21 NA
766 116.15 radiation 10 30 < th dose dependent rect. 6 1
787 116.19 temperature 15 10 > th dose dependent rect. 17 23
791 116.20 temperature 25 10 > th dose dependent rect. 15 23
800 116.23 atmosphere 1010 30 < th dose dependent rect. 6 1
803 116.24 temperature 30 270 < th dose independent rect. 9 9
819 116.26 temperature 10 90 > th dose dependent no NA NA
832 116.29 temperature 25 90 > th dose dependent rect. 5 11
836 116.30 humidity 90 30 < th dose dependent rect. 6 1
853 116.32 temperature 10 720 > th dose dependent rect. 4 11
885 116.36 temperature 10 720 > th dose dependent rect. 5 9
924 116.41 temperature 30 90 < th dose independent rect. 1 23
950 116.46 temperature 30 720 < th dose dependent rect. 9 3
955 116.46 temperature 30 90 < th dose dependent rect. 10 13
987 116.51 temperature 30 720 > th dose independent rect. 11 2
993 116.52 temperature 30 720 < th dose independent rect. 9 4