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Os09g0500600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0241) R2 : 0.425
β1 : 1.3 (0.0884) R2dD : 0.284 R2D : 0.259
β2 : 0.698 (0.0617) R2dC : 0.162 R2C : 0.149
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0515) R2dN8 : 0.00713 R2N8 : -0.0113
σ : 0.454
deviance : 93.94
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.14 0.444 6.23 1.32 0.81 0.353 -0.949 -1.43 0.17 16.4 90.7 272 -- --
89.1 0.44 6.22 1.34 0.728 0.694 -0.509 -- 0.129 15.9 95.42 304 -- --
90.48 0.443 6.23 1.29 0.823 0.443 -- -0.75 0.163 16.4 91.5 336 -- --
87.35 0.435 6.23 1.32 0.752 1.51 -- -- 0.129 16.4 95.18 233 -- --
108.34 0.487 6.24 1.29 -- -0.444 -- 0.0975 0.0541 -- 68 1195 -- --
93.33 0.453 6.23 1.31 0.701 -- -0.466 -- 0.108 16.2 -- -- -- --
93.94 0.454 6.23 1.3 0.698 -- -- -- 0.106 16.2 -- -- -- --
108.38 0.487 6.24 1.29 -- -0.441 -- -- 0.0551 -- 68 1195 -- --
133.06 0.537 6.26 -- 0.721 1.39 -- -- -0.0179 16.4 95.63 233 -- --
120.29 0.512 6.23 1.27 -- -- -- -- 0.0872 -- -- -- -- --
138.6 0.551 6.27 -- 0.673 -- -- -- -0.0392 16.3 -- -- -- --
152.2 0.576 6.27 -- -- -0.422 -- -- -0.0865 -- 68 1195 -- --
163.09 0.596 6.26 -- -- -- -- -- -0.0541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.58 temperature 25 720 > th dose independent rect. 15 11
5 83.70 humidity 90 720 > th dose dependent rect. 20 4
21 84.23 temperature 25 720 < th dose independent rect. 15 11
32 84.40 temperature 25 720 < th dose independent rect. 15 14
54 84.63 temperature 25 720 > th dose independent sin 15 NA
59 84.67 temperature 25 720 < th dose independent sin 15 NA
70 84.80 temperature 25 720 < th dose independent rect. 18 3
75 84.89 radiation 1 1440 < th dose independent rect. 11 1
78 84.89 radiation 1 1440 < th dose dependent rect. 11 1
123 85.38 humidity 90 720 > th dose dependent rect. 23 1
135 85.51 temperature 25 720 > th dose independent rect. 20 1
144 85.59 temperature 20 270 > th dose dependent rect. 22 7
190 86.09 radiation 1 1440 > th dose independent rect. 12 1
194 86.10 temperature 25 720 > th dose dependent rect. 16 10
199 86.13 radiation 1 1440 > th dose independent rect. 12 3
209 86.15 temperature 20 270 > th dose dependent rect. 23 4
211 86.16 radiation 10 1440 < th dose dependent rect. 13 4
216 86.19 humidity 60 14400 > th dose independent rect. 3 5
242 86.30 radiation 10 1440 < th dose dependent rect. 14 2
247 86.33 humidity 90 720 > th dose independent rect. 20 4
254 86.36 radiation 1 1440 < th dose independent rect. 13 2
259 86.37 radiation 1 1440 < th dose independent rect. 9 6
264 86.38 humidity 90 720 > th dose dependent rect. 11 13
285 86.46 humidity 90 720 > th dose dependent rect. 9 15
286 86.47 humidity 90 720 > th dose independent rect. 21 2
290 86.49 atmosphere 1005 10 > th dose independent rect. 24 8
312 86.55 wind 9 4320 < th dose independent rect. 3 1
320 86.58 humidity 60 14400 < th dose independent rect. 6 1
322 86.58 humidity 60 14400 < th dose independent rect. 20 1
324 86.58 radiation 20 14400 > th dose independent rect. 17 1
376 86.58 humidity 60 14400 < th dose dependent rect. 6 1
378 86.58 humidity 60 14400 < th dose dependent rect. 20 1
380 86.58 radiation 20 14400 > th dose dependent rect. 17 1
437 86.60 humidity 60 14400 > th dose independent rect. 23 9
450 86.65 humidity 60 14400 > th dose independent rect. 1 7
453 86.66 temperature 25 720 > th dose dependent sin 13 NA
531 86.88 temperature 20 720 > th dose dependent rect. 20 1
534 86.90 humidity 90 90 > th dose dependent rect. 23 7
541 86.92 radiation 10 1440 < th dose dependent rect. 11 14
561 86.96 humidity 60 14400 > th dose independent rect. 21 11
583 87.02 atmosphere 1005 30 > th dose independent sin 8 NA
594 87.05 atmosphere 1005 10 < th dose independent sin 8 NA
615 87.09 humidity 90 90 > th dose dependent rect. 21 9
626 87.12 wind 3 10 > th dose independent rect. 4 3
659 87.23 humidity 80 43200 > th dose dependent rect. 18 7
666 87.26 wind 5 43200 < th dose independent rect. 17 1
667 87.26 humidity 60 14400 > th dose independent rect. 5 3
676 87.28 humidity 50 10 > th dose independent rect. 3 23
690 87.32 atmosphere 1005 270 > th dose independent rect. 22 9
698 87.33 humidity 80 43200 > th dose dependent rect. 20 4
711 87.36 humidity 90 30 < th dose dependent rect. 5 2
736 87.40 wind 5 43200 > th dose independent rect. 17 1
741 87.40 wind 3 10 > th dose dependent rect. 5 2
746 87.42 atmosphere 1005 90 < th dose independent rect. 19 12
756 87.45 atmosphere 1005 720 < th dose independent rect. 20 6
757 87.45 radiation 1 1440 > th dose independent rect. 11 18
759 87.45 atmosphere 1005 270 < th dose dependent rect. 1 5
778 87.48 wind 1 10 < th dose dependent rect. 2 1
781 87.48 humidity 90 90 > th dose dependent rect. 11 19
802 87.52 atmosphere 1005 720 < th dose independent rect. 23 2
805 87.52 radiation 1 1440 < th dose independent rect. 11 14
806 87.52 radiation 1 1440 < th dose independent rect. 11 16
808 87.52 radiation 1 1440 < th dose independent rect. 11 18
817 87.53 radiation 10 1440 < th dose dependent sin 17 NA
827 87.54 radiation 1 1440 < th dose independent rect. 11 10
832 87.54 humidity 90 90 > th dose dependent rect. 14 16
833 87.55 humidity 60 14400 > th dose independent rect. 7 1
889 87.61 humidity 90 43200 < th dose independent rect. 22 4
914 87.63 atmosphere 1005 270 < th dose dependent rect. 23 7
917 87.64 humidity 80 43200 > th dose dependent rect. 21 2
931 87.65 atmosphere 1005 90 < th dose independent rect. 19 14
962 87.67 temperature 30 720 < th dose dependent rect. 18 6
970 87.68 atmosphere 1005 90 < th dose dependent rect. 5 2
973 87.69 wind 9 4320 < th dose independent rect. 3 3
978 87.70 atmosphere 1005 90 < th dose independent rect. 23 8
992 87.71 atmosphere 1005 90 < th dose independent rect. 21 10
997 87.72 humidity 90 720 > th dose independent rect. 23 1