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Os09g0500200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.76 (0.0105) R2 : 0.0126
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.053 (0.022) R2dN8 : 0.0162 R2N8 : 0.0126
σ : 0.197
deviance : 17.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.96 0.182 9.76 -0.215 0.121 -0.165 0.262 -0.125 -0.0588 4.9 999 5445 -- --
14.97 0.18 9.76 -0.219 0.122 -0.184 0.261 -- -0.0576 4.9 999.1 5529 -- --
15.13 0.181 9.76 -0.216 0.124 -0.167 -- -0.12 -0.0599 5.3 999 5541 -- --
15.14 0.181 9.76 -0.221 0.126 -0.185 -- -- -0.0596 5.26 999.1 5541 -- --
15.93 0.186 9.76 -0.21 -- -0.163 -- -0.142 -0.0572 -- 999.1 5445 -- --
15.92 0.187 9.77 -0.188 0.12 -- 0.272 -- -0.0753 4.89 -- -- -- --
16.1 0.188 9.77 -0.189 0.124 -- -- -- -0.0766 5.35 -- -- -- --
15.95 0.186 9.77 -0.217 -- -0.186 -- -- -0.0561 -- 999 5445 -- --
16.41 0.189 9.76 -- 0.118 -0.144 -- -- -0.0399 5.38 1000 5627 -- --
16.9 0.192 9.77 -0.185 -- -- -- -- -0.0735 -- -- -- -- --
17.04 0.193 9.76 -- 0.121 -- -- -- -0.0555 5.41 -- -- -- --
17.15 0.193 9.76 -- -- -0.146 -- -- -0.0364 -- 998.7 5486 -- --
17.8 0.197 9.76 -- -- -- -- -- -0.053 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.69 wind 1 270 < th dose dependent rect. 9 15
4 14.70 wind 1 30 < th dose dependent rect. 21 5
10 14.73 humidity 90 270 < th dose independent rect. 23 12
12 14.74 temperature 30 90 < th dose independent rect. 9 6
17 14.75 wind 1 270 < th dose dependent rect. 21 3
23 14.79 temperature 20 720 > th dose independent rect. 5 18
41 14.84 wind 1 30 < th dose dependent rect. 9 17
48 14.86 humidity 90 270 < th dose independent sin 5 NA
49 14.86 atmosphere 1010 10 < th dose independent rect. 20 9
54 14.87 temperature 20 720 > th dose independent sin 22 NA
55 14.87 wind 1 270 < th dose independent rect. 22 1
56 14.87 temperature 20 1440 < th dose independent rect. 18 1
62 14.88 wind 5 4320 > th dose independent rect. 21 1
63 14.88 temperature 30 270 < th dose independent rect. 7 7
68 14.89 temperature 20 1440 > th dose independent rect. 18 1
71 14.89 wind 9 14400 > th dose independent rect. 19 10
74 14.90 wind 7 4320 > th dose independent rect. 8 1
85 14.90 wind 9 14400 > th dose dependent rect. 19 10
93 14.91 wind 9 14400 < th dose independent rect. 19 11
96 14.91 wind 9 14400 < th dose independent rect. 19 14
98 14.91 temperature 15 10 > th dose independent rect. 9 20
107 14.91 wind 5 14400 > th dose dependent rect. 20 20
108 14.92 temperature 20 720 < th dose independent sin 21 NA
114 14.92 temperature 20 720 > th dose independent rect. 12 11
121 14.92 temperature 20 720 < th dose independent rect. 6 17
124 14.92 temperature 10 10 > th dose dependent rect. 20 9
130 14.93 wind 9 14400 > th dose independent rect. 19 6
145 14.93 wind 9 14400 > th dose dependent rect. 19 18
149 14.94 temperature 20 720 < th dose independent sin 18 NA
154 14.94 wind 9 14400 > th dose independent rect. 19 2
162 14.94 wind 1 30 < th dose independent rect. 21 5
163 14.94 wind 9 14400 < th dose independent rect. 19 6
173 14.94 temperature 30 30 < th dose independent rect. 9 20
174 14.94 wind 7 4320 > th dose dependent rect. 8 1
175 14.94 wind 9 14400 > th dose dependent rect. 19 4
204 14.95 wind 5 14400 > th dose independent rect. 20 21
205 14.95 wind 9 14400 > th dose dependent rect. 19 2
217 14.96 wind 9 14400 < th dose independent rect. 19 2
230 14.96 wind 5 14400 > th dose independent rect. 1 15
236 14.96 wind 5 14400 > th dose dependent rect. 21 1
265 14.97 wind 1 270 < th dose independent rect. 9 15
266 14.97 temperature 20 720 < th dose independent rect. 12 15
278 14.97 temperature 30 90 < th dose independent rect. 20 19
288 14.97 wind 5 14400 > th dose dependent rect. 23 17
293 14.98 wind 5 4320 < th dose independent rect. 21 1
295 14.98 atmosphere 1010 10 < th dose independent rect. 5 4
300 14.98 wind 5 14400 < th dose independent rect. 2 14
313 14.98 wind 1 270 < th dose independent rect. 9 17
321 14.98 wind 7 14400 < th dose independent rect. 20 20
330 14.98 wind 5 14400 > th dose dependent rect. 2 14
341 14.98 wind 1 10 < th dose dependent rect. 6 21
344 14.99 humidity 90 270 > th dose independent sin 5 NA
350 14.99 temperature 20 30 > th dose independent rect. 9 6
354 14.99 temperature 20 1440 > th dose independent rect. 13 8
381 14.99 humidity 90 1440 < th dose dependent rect. 24 4
388 14.99 temperature 10 10 > th dose dependent rect. 9 20
398 15.00 temperature 20 1440 > th dose independent rect. 15 6
427 15.00 wind 5 14400 > th dose dependent sin 4 NA
428 15.00 humidity 90 1440 < th dose dependent rect. 24 1
443 15.01 wind 5 14400 > th dose independent sin 3 NA
446 15.01 wind 9 14400 > th dose independent rect. 14 1
454 15.01 temperature 20 720 < th dose independent rect. 15 11
492 15.01 humidity 90 1440 < th dose dependent rect. 24 6
509 15.02 atmosphere 995 14400 < th dose independent rect. 17 1
513 15.02 wind 7 14400 > th dose independent rect. 6 3
519 15.02 atmosphere 995 14400 > th dose independent rect. 18 4
529 15.02 temperature 20 1440 < th dose independent rect. 13 8
555 15.02 humidity 80 90 < th dose independent rect. 20 18
567 15.02 atmosphere 995 14400 < th dose dependent rect. 17 1
589 15.02 humidity 50 90 > th dose dependent rect. 15 18
591 15.02 wind 9 43200 > th dose dependent rect. 13 20
597 15.03 wind 5 14400 < th dose independent sin 3 NA
599 15.03 wind 1 14400 < th dose independent rect. 23 1
600 15.03 atmosphere 1005 4320 < th dose independent rect. 9 1
604 15.03 wind 7 14400 < th dose independent rect. 6 3
633 15.03 temperature 20 1440 < th dose independent rect. 11 11
635 15.03 temperature 20 1440 < th dose independent rect. 9 12
645 15.03 humidity 90 270 > th dose independent rect. 3 14
662 15.03 temperature 15 30 > th dose independent rect. 20 19
664 15.03 wind 5 14400 > th dose independent rect. 1 21
675 15.03 wind 9 14400 > th dose dependent sin 9 NA
676 15.03 wind 5 14400 > th dose dependent no NA NA
699 15.03 temperature 10 90 > th dose dependent rect. 9 18
703 15.03 wind 5 14400 > th dose dependent rect. 1 21
706 15.03 wind 5 14400 > th dose dependent rect. 14 23
711 15.04 wind 7 4320 < th dose independent rect. 8 1
712 15.04 temperature 20 4320 < th dose independent rect. 20 1
713 15.04 atmosphere 995 14400 > th dose independent rect. 17 1
726 15.04 temperature 20 1440 < th dose independent rect. 16 5
733 15.04 wind 1 270 < th dose independent rect. 16 8
773 15.04 atmosphere 1010 30 < th dose independent rect. 9 19
785 15.04 wind 5 14400 > th dose independent rect. 10 23
790 15.04 humidity 80 43200 < th dose dependent rect. 21 1
793 15.04 atmosphere 1000 4320 < th dose dependent rect. 9 2
794 15.04 humidity 50 1440 > th dose dependent rect. 24 3
803 15.04 atmosphere 995 14400 < th dose dependent rect. 16 7
824 15.04 wind 5 14400 > th dose dependent rect. 8 22
832 15.04 wind 5 14400 > th dose dependent rect. 6 23
842 15.05 wind 5 14400 > th dose independent no NA NA
849 15.05 temperature 20 4320 > th dose independent rect. 20 1
850 15.05 atmosphere 1000 4320 > th dose independent rect. 8 1
854 15.05 atmosphere 1005 4320 < th dose independent rect. 21 1
855 15.05 wind 7 43200 < th dose independent rect. 13 2
887 15.05 humidity 90 270 > th dose independent rect. 3 12
917 15.05 humidity 90 270 > th dose independent rect. 23 18
934 15.05 humidity 90 270 < th dose independent rect. 23 20
938 15.05 wind 5 14400 > th dose independent rect. 10 21
939 15.05 wind 9 43200 > th dose independent rect. 13 21
943 15.05 wind 5 14400 < th dose independent rect. 1 21
944 15.05 wind 9 43200 < th dose independent rect. 13 21
951 15.05 wind 5 14400 > th dose independent rect. 15 22
968 15.05 wind 9 14400 > th dose dependent sin 12 NA
970 15.05 wind 5 43200 > th dose dependent rect. 13 1
972 15.05 humidity 90 1440 < th dose dependent rect. 2 1