Os09g0499700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0499700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.74 | 0.677 | 5.38 | 0.47 | 0.363 | -2.52 | -0.0949 | -0.47 | 0.0252 | 15.1 | 15.99 | 581 | -- | -- |
| 207.49 | 0.671 | 5.36 | 0.573 | 0.495 | -2.72 | 0.00688 | -- | 0.046 | 14.6 | 14.83 | 478 | -- | -- |
| 207.65 | 0.671 | 5.38 | 0.494 | 0.365 | -2.57 | -- | -0.36 | 0.03 | 15 | 15.52 | 570 | -- | -- |
| 207.41 | 0.671 | 5.37 | 0.546 | 0.529 | -2.7 | -- | -- | 0.0509 | 14.6 | 14.9 | 468 | -- | -- |
| 210.02 | 0.675 | 5.39 | 0.453 | -- | -2.6 | -- | -0.752 | 0.00648 | -- | 9.359 | 753 | -- | -- |
| 293.54 | 0.803 | 5.44 | -0.0852 | 0.638 | -- | 0.323 | -- | -0.359 | 9.28 | -- | -- | -- | -- |
| 293.91 | 0.803 | 5.44 | -0.0731 | 0.636 | -- | -- | -- | -0.359 | 9.35 | -- | -- | -- | -- |
| 210.47 | 0.676 | 5.37 | 0.589 | -- | -2.61 | -- | -- | 0.0427 | -- | 12.78 | 746 | -- | -- |
| 214.21 | 0.682 | 5.39 | -- | 0.605 | -2.44 | -- | -- | -0.0405 | 14 | 15.4 | 396 | -- | -- |
| 317.51 | 0.833 | 5.46 | -0.0763 | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
| 294.05 | 0.802 | 5.44 | -- | 0.636 | -- | -- | -- | -0.35 | 9.36 | -- | -- | -- | -- |
| 218.66 | 0.689 | 5.39 | -- | -- | -2.39 | -- | -- | -0.0516 | -- | 13.1 | 723 | -- | -- |
| 317.67 | 0.832 | 5.46 | -- | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.94 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 202.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 6 | 204.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 8 | 204.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 16 | 204.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 19 | 204.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 20 | 204.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 42 | 204.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 61 | 204.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 73 | 204.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 74 | 204.90 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 79 | 204.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 129 | 205.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 327 | 206.36 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 385 | 206.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 401 | 206.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 515 | 206.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 762 | 207.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 963 | 208.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |