Os09g0499400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0499400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279 | 0.785 | 5.62 | -1.55 | 1.89 | -2.1 | 0.989 | 4.3 | 0.117 | 15.6 | 29.98 | 1468 | -- | -- |
| 281.61 | 0.782 | 5.5 | -0.797 | 1.92 | -1.67 | 1.29 | -- | 0.234 | 15.7 | 30.21 | 1499 | -- | -- |
| 281.84 | 0.782 | 5.61 | -1.48 | 1.88 | -2.11 | -- | 4.17 | 0.122 | 15.6 | 29.9 | 1497 | -- | -- |
| 283.47 | 0.784 | 5.49 | -0.632 | 1.88 | -1.71 | -- | -- | 0.249 | 15.6 | 30.3 | 1529 | -- | -- |
| 438.43 | 0.975 | 5.66 | -1.48 | -- | -2.51 | -- | 5.03 | -0.212 | -- | 29.7 | 1820 | -- | -- |
| 405.96 | 0.945 | 5.56 | -0.158 | 1.76 | -- | 0.709 | -- | -0.0418 | 15.8 | -- | -- | -- | -- |
| 407.46 | 0.945 | 5.56 | -0.148 | 1.77 | -- | -- | -- | -0.0377 | 15.8 | -- | -- | -- | -- |
| 442.03 | 0.979 | 5.57 | -0.747 | -- | -2 | -- | -- | -0.176 | -- | 29.49 | 1818 | -- | -- |
| 292.06 | 0.796 | 5.47 | -- | 1.86 | -1.72 | -- | -- | 0.338 | 15.6 | 30.69 | 1596 | -- | -- |
| 580.02 | 1.13 | 5.55 | -0.221 | -- | -- | -- | -- | -0.0848 | -- | -- | -- | -- | -- |
| 408.04 | 0.945 | 5.55 | -- | 1.77 | -- | -- | -- | -0.0213 | 15.8 | -- | -- | -- | -- |
| 456 | 0.995 | 5.56 | -- | -- | -1.85 | -- | -- | -0.0905 | -- | 29.47 | 1820 | -- | -- |
| 581.31 | 1.13 | 5.55 | -- | -- | -- | -- | -- | -0.0603 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.32 | radiation | 1e+01 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 2 | 270.42 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 3 | 270.48 | wind | 5e+00 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 5 | 270.68 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 7 | 271.07 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 8 | 271.15 | wind | 5e+00 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 11 | 271.80 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 15 | 271.92 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 17 | 271.94 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 22 | 272.22 | wind | 5e+00 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 23 | 272.23 | wind | 5e+00 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 26 | 272.36 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 29 | 272.50 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 31 | 272.54 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 36 | 272.78 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 37 | 272.78 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 42 | 272.88 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 43 | 272.89 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 45 | 272.97 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 59 | 273.45 | wind | 5e+00 | 43200 | > th | dose dependent | sin | 3 | NA |
| 66 | 273.60 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 68 | 273.60 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 78 | 273.77 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 88 | 273.88 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 90 | 273.94 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 100 | 274.01 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 112 | 274.08 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 133 | 274.24 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 139 | 274.28 | atmosphere | 1e+03 | 43200 | > th | dose independent | sin | 14 | NA |
| 189 | 274.57 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 192 | 274.57 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 205 | 274.64 | atmosphere | 1e+03 | 43200 | < th | dose independent | sin | 13 | NA |
| 280 | 274.94 | temperature | 3e+01 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 319 | 275.10 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 337 | 275.15 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 412 | 275.46 | wind | 7e+00 | 43200 | < th | dose independent | sin | 3 | NA |
| 415 | 275.47 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 511 | 275.86 | wind | 7e+00 | 43200 | > th | dose independent | sin | 3 | NA |
| 535 | 275.95 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 546 | 275.99 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 562 | 276.04 | temperature | 3e+01 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 579 | 276.14 | atmosphere | 1e+03 | 43200 | > th | dose independent | no | NA | NA |
| 603 | 276.22 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 644 | 276.38 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 679 | 276.48 | wind | 5e+00 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 702 | 276.57 | temperature | 3e+01 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 742 | 276.69 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 773 | 276.80 | radiation | 1e+01 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 777 | 276.81 | atmosphere | 1e+03 | 43200 | < th | dose independent | no | NA | NA |
| 803 | 276.91 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 804 | 276.92 | temperature | 3e+01 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 817 | 276.95 | temperature | 3e+01 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 827 | 276.99 | temperature | 3e+01 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 854 | 277.08 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 885 | 277.17 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 901 | 277.23 | temperature | 3e+01 | 1440 | > th | dose independent | rect. | 9 | 4 |