Os09g0498400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0498400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 458.69 | 1.01 | 7.84 | 2.5 | 7.76 | -5.51 | -2.31 | 8.68 | 0.0275 | 15.2 | 50.26 | 671 | 0.0834 | 19.1 |
| 483.85 | 1.02 | 7.8 | 2.44 | 8.08 | -5.57 | 4.42 | -- | 0.0161 | 15.2 | 50 | 662 | 0.45 | 18.7 |
| 462.56 | 1 | 7.79 | 2.54 | 7.88 | -5.5 | -- | 6.22 | 0.109 | 15.1 | 50.1 | 663 | 0.156 | 19 |
| 537.6 | 1.08 | 7.8 | 2.65 | 6.46 | -3.49 | -- | -- | -0.025 | 15.5 | 50.05 | 633 | 0.692 | 19.5 |
| 1321.18 | 1.7 | 7.81 | 2.88 | -- | 0.629 | -- | 1.13 | -0.211 | -- | 47.08 | 1413 | 0.473 | 19.5 |
| 535.43 | 1.08 | 7.82 | 2.86 | 3.64 | -- | 4.98 | -- | -0.0914 | 15.6 | -- | -- | -- | -- |
| 611.12 | 1.16 | 7.8 | 2.95 | 3.68 | -- | -- | -- | -0.0623 | 15.6 | -- | -- | -- | -- |
| 700.57 | 1.23 | 7.74 | 3.2 | -- | 2.63 | -- | -- | 0.0058 | -- | 25.43 | 2146 | 0.0167 | 19.6 |
| 717.49 | 1.25 | 7.79 | -- | 6.65 | -3.84 | -- | -- | -0.183 | 15.4 | 52 | 624 | 0.617 | 19.6 |
| 1361.6 | 1.72 | 7.8 | 2.79 | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
| 839.83 | 1.36 | 7.88 | -- | 3.62 | -- | -- | -- | -0.39 | 15.6 | -- | -- | -- | -- |
| 847.13 | 1.36 | 7.81 | -- | -- | 3.91 | -- | -- | -0.298 | -- | 39.95 | 2280 | 0.384 | 16.5 |
| 1567.24 | 1.85 | 7.87 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 467.88 | humidity | 50 | 720 | > th | dose independent | rect. | 24 | 19 |
| 5 | 473.97 | humidity | 50 | 720 | > th | dose independent | rect. | 14 | 14 |
| 7 | 475.88 | humidity | 50 | 720 | > th | dose independent | rect. | 13 | 23 |
| 15 | 481.58 | humidity | 50 | 720 | < th | dose independent | rect. | 17 | 23 |
| 16 | 482.11 | humidity | 50 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 34 | 482.15 | humidity | 50 | 720 | < th | dose dependent | sin | 21 | NA |
| 36 | 482.19 | humidity | 50 | 720 | > th | dose independent | sin | 3 | NA |
| 56 | 482.22 | humidity | 50 | 720 | < th | dose dependent | no | NA | NA |
| 215 | 482.54 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 9 |
| 217 | 482.60 | humidity | 50 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 241 | 483.56 | humidity | 50 | 720 | < th | dose independent | sin | 5 | NA |
| 244 | 483.84 | humidity | 50 | 720 | < th | dose independent | rect. | 13 | 3 |
| 245 | 483.84 | humidity | 50 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 266 | 484.10 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 13 |
| 269 | 484.61 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 294 | 485.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 298 | 485.68 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 301 | 485.85 | humidity | 80 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 308 | 486.39 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 313 | 486.85 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 2 |
| 324 | 487.12 | humidity | 60 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 327 | 487.32 | temperature | 15 | 90 | > th | dose independent | rect. | 18 | 18 |
| 357 | 488.34 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 360 | 488.60 | humidity | 50 | 1440 | > th | dose independent | sin | 6 | NA |
| 525 | 488.91 | humidity | 50 | 720 | < th | dose dependent | sin | 9 | NA |
| 547 | 489.23 | humidity | 60 | 30 | > th | dose dependent | rect. | 23 | 11 |
| 551 | 489.37 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 569 | 489.49 | humidity | 50 | 720 | > th | dose independent | no | NA | NA |
| 588 | 489.57 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 18 |
| 592 | 489.69 | humidity | 50 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 594 | 489.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 603 | 489.83 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 628 | 490.31 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 653 | 490.64 | humidity | 50 | 720 | < th | dose independent | no | NA | NA |
| 793 | 490.68 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 866 | 491.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 869 | 491.12 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 871 | 491.26 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 21 |
| 873 | 491.29 | humidity | 50 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 878 | 491.39 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 892 | 491.79 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 11 |
| 913 | 491.99 | humidity | 50 | 1440 | < th | dose independent | sin | 8 | NA |
| 955 | 492.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 959 | 492.12 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 2 |