Os09g0498000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0498000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.14 | 0.426 | 9.94 | -0.207 | 0.525 | -1.3 | -0.922 | -0.641 | 0.347 | 18 | 24.7 | 100 | -- | -- |
| 82.27 | 0.422 | 9.96 | -0.309 | 0.473 | -1.22 | -0.848 | -- | 0.295 | 18.2 | 25.8 | 116 | -- | -- |
| 84.08 | 0.427 | 9.94 | -0.209 | 0.525 | -1.3 | -- | -0.482 | 0.352 | 18.1 | 24.55 | 104 | -- | -- |
| 83.91 | 0.427 | 9.96 | -0.291 | 0.458 | -1.24 | -- | -- | 0.296 | 18.4 | 25.8 | 113 | -- | -- |
| 92.15 | 0.447 | 9.96 | -0.349 | -- | -1.39 | -- | 0.00918 | 0.25 | -- | 27.06 | 157 | -- | -- |
| 105.1 | 0.481 | 9.9 | 0.0107 | 0.649 | -- | -0.83 | -- | 0.558 | 17.1 | -- | -- | -- | -- |
| 106.83 | 0.484 | 9.9 | 0.0105 | 0.643 | -- | -- | -- | 0.555 | 17.1 | -- | -- | -- | -- |
| 92.12 | 0.447 | 9.96 | -0.36 | -- | -1.42 | -- | -- | 0.238 | -- | 27.06 | 158 | -- | -- |
| 86.04 | 0.432 | 9.95 | -- | 0.475 | -1.14 | -- | -- | 0.342 | 18.3 | 25.82 | 113 | -- | -- |
| 128.52 | 0.53 | 9.89 | -0.0124 | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
| 106.84 | 0.484 | 9.9 | -- | 0.643 | -- | -- | -- | 0.553 | 17.1 | -- | -- | -- | -- |
| 95.24 | 0.455 | 9.95 | -- | -- | -1.3 | -- | -- | 0.3 | -- | 27.1 | 155 | -- | -- |
| 128.53 | 0.529 | 9.89 | -- | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 6 | 75.37 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 9 | 76.04 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 10 | 76.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 11 | 76.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 13 | 76.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 15 | 76.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 154 | 80.74 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 17 |
| 176 | 81.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 223 | 81.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 254 | 82.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 264 | 82.19 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 273 | 82.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 276 | 82.28 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 16 |
| 281 | 82.34 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 8 |
| 297 | 82.46 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 308 | 82.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 320 | 82.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 353 | 82.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 381 | 83.08 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 391 | 83.16 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 8 |
| 415 | 83.33 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 8 | 20 |
| 429 | 83.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 458 | 83.56 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 19 |
| 468 | 83.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 529 | 83.97 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 8 |
| 578 | 84.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 21 |
| 586 | 84.19 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 21 |
| 589 | 84.21 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 18 |
| 607 | 84.34 | wind | 7 | 90 | < th | dose independent | rect. | 8 | 20 |
| 657 | 84.61 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 673 | 84.66 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 700 | 84.78 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 6 | 21 |
| 717 | 84.86 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 21 |
| 733 | 84.97 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 19 |
| 754 | 85.05 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 3 |
| 765 | 85.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 779 | 85.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 949 | 85.86 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 20 | 8 |
| 963 | 85.90 | wind | 1 | 270 | > th | dose independent | rect. | 4 | 1 |