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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0497500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ervatamin B (EC 3.4.22.-) (ERV-B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0194) R2 : 0.276
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.647 (0.0499) R2dC : 0.269 R2C : 0.267
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0846 (0.0408) R2dN8 : 0.00881 R2N8 : 0.00643
σ : 0.366
deviance : 61.14
__
_____
C
peak time of C : 7.71
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.1 0.349 3.36 0.254 0.686 0.409 0.594 0.282 0.143 8.55 38.34 97 -- --
55.18 0.346 3.36 0.25 0.689 0.397 0.606 -- 0.132 8.53 37.76 81 -- --
56.15 0.349 3.35 0.268 0.687 0.394 -- 0.152 0.151 8.47 38.48 97 -- --
56.09 0.349 3.36 0.266 0.685 0.375 -- -- 0.137 8.41 37.86 81 -- --
61.63 0.366 3.38 0.406 -- 0.895 -- 0.0989 0.158 -- 1.32 902 -- --
58.13 0.357 3.37 0.276 0.642 -- 0.533 -- 0.118 7.87 -- -- -- --
58.93 0.359 3.37 0.29 0.644 -- -- -- 0.117 7.74 -- -- -- --
61.67 0.366 3.37 0.368 -- 0.871 -- -- 0.158 -- 1.41 907 -- --
57.98 0.355 3.37 -- 0.689 0.417 -- -- 0.11 8.45 39.2 96 -- --
81.35 0.421 3.38 0.298 -- -- -- -- 0.126 -- -- -- -- --
61.14 0.366 3.37 -- 0.647 -- -- -- 0.0846 7.71 -- -- -- --
64.84 0.375 3.39 -- -- 0.836 -- -- 0.114 -- 1.438 907 -- --
83.69 0.427 3.39 -- -- -- -- -- 0.093 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.92 temperature 20.0 270 > th dose dependent rect. 4 2
4 50.67 radiation 40.0 90 < th dose independent rect. 4 19
5 50.72 temperature 15.0 90 > th dose dependent rect. 4 5
10 50.85 wind 9.0 90 < th dose dependent rect. 4 19
14 51.02 temperature 20.0 270 > th dose independent rect. 4 2
17 51.09 temperature 10.0 270 > th dose dependent rect. 23 2
19 51.11 temperature 10.0 90 > th dose dependent rect. 23 5
27 51.29 temperature 20.0 10 > th dose dependent rect. 5 4
28 51.33 radiation 40.0 90 < th dose independent rect. 4 7
32 51.38 temperature 10.0 270 > th dose dependent rect. 2 7
33 51.40 temperature 20.0 270 > th dose independent rect. 3 5
34 51.41 humidity 80.0 270 > th dose independent rect. 4 2
38 51.51 wind 3.0 90 < th dose independent rect. 4 8
40 51.54 wind 7.0 90 < th dose dependent rect. 4 8
45 51.58 wind 7.0 90 < th dose independent rect. 4 19
53 51.61 humidity 80.0 90 > th dose independent rect. 23 5
57 51.63 humidity 80.0 270 > th dose independent rect. 23 2
58 51.65 temperature 20.0 270 > th dose independent rect. 23 2
62 51.68 humidity 50.0 90 > th dose dependent rect. 23 5
66 51.71 humidity 50.0 270 > th dose dependent rect. 23 2
70 51.75 wind 9.0 270 < th dose independent rect. 1 22
72 51.76 wind 7.0 90 < th dose dependent rect. 4 14
76 51.79 wind 3.0 90 < th dose independent rect. 4 14
78 51.79 radiation 40.0 90 < th dose dependent rect. 4 20
88 51.87 humidity 80.0 270 > th dose independent rect. 3 4
91 51.88 wind 9.0 270 < th dose independent rect. 23 2
92 51.88 temperature 10.0 270 > th dose independent rect. 23 2
93 51.88 temperature 30.0 270 < th dose independent rect. 23 2
94 51.88 humidity 50.0 270 > th dose independent rect. 23 2
97 51.88 atmosphere 995.0 270 > th dose independent rect. 23 2
98 51.88 radiation 1.0 270 < th dose independent rect. 23 2
103 51.88 temperature 10.0 270 > th dose independent rect. 1 22
104 51.88 radiation 1.0 270 < th dose dependent rect. 23 2
111 51.90 temperature 20.0 90 > th dose independent rect. 4 19
114 51.91 precipitation 0.1 270 < th dose independent rect. 23 2
115 51.91 precipitation 0.1 270 < th dose dependent rect. 23 2
117 51.92 temperature 25.0 10 > th dose independent rect. 20 15
119 51.93 temperature 10.0 90 > th dose independent rect. 23 5
120 51.93 temperature 30.0 90 < th dose independent rect. 23 5
121 51.93 humidity 50.0 90 > th dose independent rect. 23 5
124 51.93 atmosphere 995.0 90 > th dose independent rect. 23 5
125 51.93 radiation 1.0 90 < th dose independent rect. 23 5
131 51.93 temperature 10.0 90 > th dose independent rect. 4 19
134 51.93 radiation 1.0 90 < th dose dependent rect. 23 5
139 51.94 wind 9.0 90 < th dose independent rect. 23 5
148 51.98 precipitation 0.1 90 < th dose independent rect. 23 5
150 51.98 precipitation 0.1 90 < th dose dependent rect. 23 5
154 52.00 precipitation 0.1 270 < th dose independent rect. 1 22
156 52.00 precipitation 0.1 270 < th dose dependent rect. 1 22
163 52.03 precipitation 0.1 90 < th dose independent rect. 4 19
165 52.03 precipitation 0.1 90 < th dose dependent rect. 4 19
167 52.05 wind 9.0 90 < th dose dependent rect. 4 5
170 52.06 wind 7.0 270 < th dose dependent rect. 4 2
172 52.07 humidity 70.0 270 > th dose dependent rect. 4 2
182 52.09 wind 9.0 270 < th dose dependent rect. 2 21
184 52.10 atmosphere 1015.0 90 < th dose independent rect. 4 19
186 52.11 humidity 50.0 270 > th dose independent rect. 23 14
188 52.12 radiation 10.0 270 < th dose independent rect. 4 2
189 52.12 wind 3.0 90 < th dose independent rect. 4 5
190 52.13 wind 9.0 270 < th dose independent rect. 13 10
192 52.14 atmosphere 1015.0 270 < th dose independent rect. 23 2
202 52.18 wind 3.0 270 < th dose independent rect. 4 2
204 52.18 wind 9.0 270 < th dose dependent rect. 23 2
211 52.22 atmosphere 1015.0 90 < th dose independent rect. 23 5
212 52.22 radiation 40.0 270 < th dose independent rect. 2 21
217 52.23 temperature 10.0 270 > th dose independent rect. 13 10
218 52.23 temperature 10.0 270 > th dose independent rect. 23 14
219 52.23 atmosphere 995.0 270 > th dose independent rect. 23 14
225 52.25 atmosphere 1015.0 90 < th dose dependent rect. 4 5
227 52.26 atmosphere 995.0 270 > th dose dependent rect. 23 3
230 52.27 precipitation 0.1 90 < th dose independent rect. 4 5
231 52.27 precipitation 0.1 90 < th dose dependent rect. 4 5
234 52.29 wind 9.0 90 < th dose independent rect. 4 5
235 52.29 temperature 10.0 90 > th dose independent rect. 4 5
237 52.29 temperature 30.0 90 < th dose independent rect. 4 5
239 52.29 atmosphere 995.0 90 > th dose independent rect. 4 5
240 52.29 atmosphere 1015.0 90 < th dose independent rect. 4 5
243 52.29 temperature 10.0 90 > th dose independent rect. 9 19
244 52.29 radiation 40.0 90 < th dose independent rect. 3 23
248 52.30 atmosphere 1015.0 270 < th dose dependent rect. 4 2
250 52.30 wind 9.0 90 < th dose dependent rect. 23 5
255 52.31 humidity 50.0 90 > th dose dependent rect. 4 7
258 52.32 precipitation 0.1 270 < th dose independent rect. 4 2
259 52.32 precipitation 0.1 270 < th dose dependent rect. 4 2
263 52.33 radiation 40.0 270 < th dose dependent rect. 3 6
268 52.35 wind 7.0 270 < th dose independent rect. 4 2
294 52.37 temperature 10.0 270 > th dose independent rect. 4 2
296 52.37 temperature 30.0 270 < th dose independent rect. 4 2
297 52.37 humidity 50.0 270 > th dose independent rect. 4 2
300 52.37 atmosphere 995.0 270 > th dose independent rect. 4 2
301 52.37 atmosphere 1015.0 270 < th dose independent rect. 4 2
306 52.37 temperature 10.0 270 > th dose independent rect. 6 22
312 52.38 wind 9.0 270 < th dose independent rect. 23 14
318 52.39 radiation 40.0 270 < th dose dependent rect. 4 2
331 52.41 temperature 10.0 1440 > th dose independent rect. 5 5
334 52.41 atmosphere 995.0 1440 > th dose independent rect. 5 5
335 52.41 atmosphere 1015.0 1440 < th dose independent rect. 5 5
337 52.41 temperature 10.0 1440 > th dose independent rect. 10 19
345 52.43 precipitation 0.1 90 < th dose independent rect. 9 19
349 52.43 precipitation 0.1 90 < th dose dependent rect. 9 19
364 52.46 precipitation 0.1 270 < th dose independent rect. 23 14
365 52.46 atmosphere 995.0 90 > th dose independent rect. 9 19
368 52.46 humidity 50.0 90 > th dose dependent rect. 4 5
370 52.46 precipitation 0.1 270 < th dose dependent rect. 23 14
379 52.49 atmosphere 1015.0 270 < th dose independent rect. 23 14
388 52.53 precipitation 0.1 270 < th dose independent rect. 13 10
389 52.53 temperature 25.0 10 > th dose independent rect. 18 17
393 52.53 precipitation 0.1 270 < th dose dependent rect. 13 10
397 52.54 wind 9.0 90 < th dose independent rect. 9 19
406 52.55 radiation 40.0 270 < th dose dependent rect. 2 21
431 52.62 wind 7.0 10 < th dose independent rect. 5 19
452 52.66 radiation 40.0 270 < th dose independent rect. 13 10
461 52.67 wind 1.0 90 > th dose independent rect. 23 5
484 52.70 atmosphere 995.0 90 > th dose independent rect. 4 19
491 52.71 precipitation 0.1 270 < th dose independent rect. 6 22
496 52.71 precipitation 0.1 270 < th dose dependent rect. 6 22
514 52.74 temperature 10.0 90 > th dose dependent rect. 4 19
517 52.75 atmosphere 1015.0 90 < th dose independent rect. 9 19
531 52.77 radiation 1.0 90 < th dose dependent sin 10 NA
555 52.80 radiation 1.0 90 < th dose dependent rect. 23 13
572 52.82 radiation 40.0 90 < th dose independent rect. 4 11
573 52.82 radiation 40.0 270 < th dose independent rect. 3 13
588 52.83 radiation 1.0 90 < th dose dependent rect. 23 9
599 52.85 radiation 20.0 270 < th dose independent rect. 2 21
654 52.91 wind 9.0 270 < th dose independent rect. 6 22
674 52.92 wind 1.0 270 > th dose independent rect. 23 14
715 52.94 atmosphere 1000.0 10 > th dose independent rect. 24 5
740 52.96 wind 7.0 270 < th dose independent rect. 2 7
741 52.96 temperature 30.0 90 < th dose independent rect. 4 7
748 52.97 wind 7.0 10 < th dose independent rect. 15 9
773 52.98 temperature 30.0 270 < th dose independent rect. 2 7
774 52.98 precipitation 0.1 270 < th dose independent rect. 2 7
783 52.98 precipitation 0.1 270 < th dose dependent rect. 2 7
804 53.01 wind 1.0 270 > th dose independent rect. 23 2
809 53.01 wind 1.0 270 > th dose independent rect. 13 10
819 53.02 temperature 10.0 270 > th dose independent rect. 2 7
821 53.02 humidity 50.0 270 > th dose independent rect. 2 7
822 53.02 atmosphere 995.0 270 > th dose independent rect. 2 7
823 53.02 atmosphere 1015.0 270 < th dose independent rect. 2 7
828 53.02 temperature 10.0 270 > th dose independent rect. 9 17
833 53.02 atmosphere 995.0 10 > th dose dependent rect. 24 5
880 53.06 radiation 1.0 30 < th dose independent sin 9 NA
908 53.08 humidity 50.0 90 > th dose independent rect. 9 19
910 53.08 precipitation 0.1 270 < th dose independent rect. 7 20
915 53.08 precipitation 0.1 270 < th dose dependent rect. 7 20
918 53.09 precipitation 0.1 90 < th dose independent rect. 4 7
929 53.09 precipitation 0.1 90 < th dose dependent rect. 4 7
940 53.10 temperature 10.0 90 > th dose independent rect. 4 7
941 53.10 atmosphere 995.0 90 > th dose independent rect. 4 7
942 53.10 atmosphere 1015.0 90 < th dose independent rect. 4 7
943 53.10 temperature 10.0 90 > th dose independent rect. 11 17
947 53.10 humidity 50.0 270 > th dose dependent rect. 21 6
951 53.11 temperature 10.0 1440 > th dose independent rect. 1 4
954 53.11 temperature 30.0 1440 < th dose independent rect. 1 4
958 53.11 humidity 50.0 1440 > th dose independent rect. 1 4
967 53.11 atmosphere 995.0 1440 > th dose independent rect. 1 4
968 53.11 radiation 20.0 1440 < th dose independent rect. 1 4
990 53.11 temperature 10.0 1440 > th dose independent rect. 5 20