Os09g0497400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF850, transmembrane eukaryotic family protein.
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Os09g0497400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF850, transmembrane eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.36 | 0.212 | 11.1 | 0.513 | 0.159 | -0.998 | 0.319 | -0.62 | 0.249 | 16.2 | 15.2 | 27 | -- | -- |
| 20.64 | 0.212 | 11.1 | 0.597 | 0.153 | -0.98 | 0.183 | -- | 0.265 | 16.3 | 15.16 | 23 | -- | -- |
| 20.55 | 0.211 | 11.1 | 0.552 | 0.157 | -0.995 | -- | -0.364 | 0.26 | 15.5 | 15.2 | 18 | -- | -- |
| 20.66 | 0.212 | 11 | 0.604 | 0.155 | -1 | -- | -- | 0.275 | 15.5 | 15.22 | 18 | -- | -- |
| 21.51 | 0.217 | 11.1 | 0.509 | -- | -0.825 | -- | -0.369 | 0.231 | -- | 15.2 | 18 | -- | -- |
| 30.76 | 0.26 | 11.1 | 0.407 | 0.152 | -- | 0.189 | -- | 0.129 | 1.04 | -- | -- | -- | -- |
| 30.9 | 0.26 | 11.1 | 0.4 | 0.153 | -- | -- | -- | 0.127 | 1.33 | -- | -- | -- | -- |
| 21.59 | 0.216 | 11.1 | 0.566 | -- | -0.839 | -- | -- | 0.248 | -- | 15.2 | 18 | -- | -- |
| 29.28 | 0.253 | 11.1 | -- | 0.067 | -0.677 | -- | -- | 0.172 | 16.4 | 16.8 | 4 | -- | -- |
| 32.35 | 0.266 | 11.1 | 0.406 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 35.12 | 0.277 | 11.1 | -- | 0.16 | -- | -- | -- | 0.0828 | 1.42 | -- | -- | -- | -- |
| 29.46 | 0.254 | 11.1 | -- | -- | -0.657 | -- | -- | 0.163 | -- | 15.69 | 5 | -- | -- |
| 36.7 | 0.283 | 11.1 | -- | -- | -- | -- | -- | 0.0855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 19.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 4 | 19.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 15 | 19.64 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 23 | 19.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 44 | 19.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 77 | 19.95 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 84 | 19.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 126 | 20.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 129 | 20.12 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 133 | 20.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 164 | 20.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 188 | 20.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 210 | 20.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 224 | 20.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 230 | 20.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 236 | 20.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 251 | 20.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 266 | 20.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 272 | 20.38 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 316 | 20.41 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 384 | 20.45 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 401 | 20.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 436 | 20.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 495 | 20.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 496 | 20.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 582 | 20.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 606 | 20.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 607 | 20.61 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 654 | 20.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 672 | 20.66 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 874 | 20.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 905 | 20.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 19 |