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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0496100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0305) R2 : 0.978
β1 : -0.769 (0.115) R2dD : 0.00247 R2D : -0.324
β2 : 0.892 (0.0751) R2dC : 0.00767 R2C : -0.301
β3 : -1.85 (0.155) R2dE : 0.00884 R2E : -0.349
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -9.14 (0.0676) R2dN8 : 1.33 R2N8 : 0.965
σ : 0.563
deviance : 146.02
__
_____
C
peak time of C : 0.532
E
wheather : temperature
threshold : 99.33
memory length : 228
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.54 0.563 12.6 -0.484 0.913 -1.7 0.328 -1.71 -9.1 0.5 31.67 224 -- --
146.03 0.563 12.6 -0.762 0.924 -1.86 0.0867 -- -9.14 0.439 52.76 197 -- --
143.98 0.559 12.6 -0.493 0.913 -1.71 -- -1.6 -9.09 0.501 31.9 226 -- --
146.02 0.563 12.6 -0.769 0.892 -1.85 -- -- -9.14 0.532 99.33 228 -- --
160.84 0.591 12.6 -0.661 -- -1.83 -- -1.07 -9.12 -- 38.42 770 -- --
181.04 0.631 12.5 -0.361 0.754 -- 0.293 -- -8.88 22 -- -- -- --
181.37 0.631 12.5 -0.372 0.752 -- -- -- -8.88 22.1 -- -- -- --
162.08 0.593 12.6 -0.839 -- -1.84 -- -- -9.16 -- 98.63 775 -- --
159.92 0.589 12.6 -- 0.861 -1.49 -- -- -9.01 0.00975 105.8 192 -- --
215.51 0.686 12.5 -0.362 -- -- -- -- -8.88 -- -- -- -- --
185.03 0.636 12.5 -- 0.75 -- -- -- -8.84 22.1 -- -- -- --
178.7 0.623 12.5 -- -- -1.52 -- -- -9.03 -- 102.4 752 -- --
218.98 0.691 12.5 -- -- -- -- -- -8.84 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.31 temperature 20 270 > th dose dependent sin 8 NA
2 136.87 temperature 10 270 > th dose dependent sin 8 NA
4 137.53 temperature 20 720 > th dose dependent rect. 1 2
11 138.61 temperature 30 270 < th dose dependent sin 8 NA
12 139.08 temperature 15 720 > th dose dependent rect. 21 6
16 139.37 temperature 10 30 > th dose dependent rect. 1 23
18 139.55 temperature 10 270 > th dose dependent rect. 6 23
25 139.99 temperature 15 270 > th dose dependent rect. 17 23
36 140.77 temperature 30 270 < th dose dependent rect. 15 19
37 140.82 temperature 20 270 > th dose dependent rect. 22 11
50 141.48 temperature 15 30 > th dose dependent rect. 21 23
53 141.57 temperature 30 30 < th dose dependent rect. 3 23
69 142.17 temperature 20 720 > th dose dependent sin 11 NA
73 142.40 temperature 10 720 > th dose dependent rect. 15 18
97 142.90 temperature 20 720 > th dose dependent rect. 17 16
99 142.93 temperature 30 270 < th dose dependent rect. 24 23
104 142.98 temperature 20 720 > th dose dependent rect. 19 14
133 143.58 temperature 30 270 < th dose dependent rect. 20 23
163 143.97 temperature 30 720 < th dose dependent rect. 20 10
189 144.23 temperature 30 270 < th dose dependent rect. 21 13
199 144.36 temperature 30 270 < th dose dependent no NA NA
210 144.49 temperature 15 270 > th dose dependent no NA NA
283 145.19 temperature 20 270 > th dose dependent rect. 21 19
315 145.45 temperature 20 30 > th dose dependent rect. 8 21
321 145.50 temperature 20 270 > th dose dependent rect. 22 15
540 146.64 temperature 30 30 < th dose dependent rect. 5 23
554 146.70 temperature 30 30 < th dose dependent rect. 5 21
610 146.97 temperature 10 720 > th dose dependent rect. 21 16
753 147.66 temperature 30 30 < th dose dependent rect. 7 23
803 147.87 temperature 20 720 > th dose independent rect. 21 6
879 148.11 temperature 20 30 > th dose dependent rect. 1 19
918 148.28 temperature 20 720 > th dose independent rect. 1 2