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Os09g0494200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chitinase-like protein (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0463) R2 : 0.467
β1 : -2.88 (0.173) R2dD : 0.351 R2D : 0.191
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.79 (0.127) R2dE : 0.25 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.258 (0.0996) R2dN8 : 0.0108 R2N8 : 0.00354
σ : 0.865
deviance : 344.95
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.64
memory length : 1197
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.68 0.857 11.4 -4.5 0.0708 2.67 -1.57 -8.15 -0.478 15.5 28.36 1221 -- --
338.6 0.857 11.2 -2.82 0.0735 1.76 -1.48 -- -0.25 15.3 28.55 1195 -- --
339.64 0.858 11.4 -4.4 0.12 2.61 -- -7.51 -0.458 19.1 28.42 1224 -- --
343.95 0.864 11.2 -2.88 0.143 1.78 -- -- -0.244 19.3 28.74 1210 -- --
340.4 0.859 11.4 -4.37 -- 2.6 -- -7.36 -0.459 -- 28.4 1220 -- --
480.08 1.03 11.2 -2.34 0.289 -- 1.59 -- -0.446 1.68 -- -- -- --
488.21 1.03 11.2 -2.39 0.333 -- -- -- -0.452 23.4 -- -- -- --
344.95 0.865 11.2 -2.88 -- 1.79 -- -- -0.258 -- 28.64 1197 -- --
548.19 1.09 11.1 -- 0.121 1.43 -- -- 0.114 18.6 31.46 1134 -- --
495.17 1.04 11.2 -2.38 -- -- -- -- -0.448 -- -- -- -- --
638.7 1.18 11.2 -- 0.311 -- -- -- -0.185 22.9 -- -- -- --
549.23 1.09 11.1 -- -- 1.38 -- -- 0.0948 -- 31.55 1116 -- --
644.69 1.19 11.2 -- -- -- -- -- -0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.94 temperature 30 1440 > th dose dependent sin 12 NA
3 347.99 temperature 25 720 > th dose dependent rect. 17 6
6 348.41 temperature 30 1440 > th dose dependent rect. 15 20
9 348.81 temperature 30 1440 > th dose dependent rect. 15 4
64 349.74 humidity 70 720 > th dose independent rect. 18 9
69 349.88 radiation 20 1440 > th dose independent rect. 16 15
75 350.32 humidity 70 1440 < th dose dependent rect. 16 15
76 350.33 humidity 70 1440 < th dose dependent rect. 16 4
123 350.86 temperature 30 1440 > th dose dependent rect. 10 9
174 351.15 temperature 30 1440 > th dose dependent no NA NA
267 351.22 temperature 30 720 < th dose independent rect. 17 9
275 351.66 humidity 70 720 < th dose independent rect. 18 2
323 352.47 temperature 30 720 > th dose dependent rect. 18 1
354 352.79 humidity 50 1440 < th dose independent rect. 16 1
363 353.14 humidity 50 1440 < th dose dependent rect. 16 1
365 353.18 temperature 30 1440 > th dose independent sin 11 NA
387 353.39 radiation 20 1440 > th dose dependent rect. 16 16
388 353.47 temperature 30 1440 < th dose independent sin 11 NA
397 353.69 temperature 30 1440 < th dose independent rect. 17 19
398 353.69 temperature 30 1440 < th dose independent rect. 15 21
401 353.90 temperature 30 720 > th dose independent rect. 17 2
417 353.96 radiation 20 1440 > th dose independent rect. 16 1
431 353.98 temperature 30 1440 > th dose independent rect. 17 19
433 354.06 temperature 30 1440 > th dose independent rect. 15 21
467 354.32 humidity 50 1440 > th dose independent rect. 16 1
551 355.41 radiation 20 1440 < th dose independent rect. 16 1
575 355.94 radiation 20 1440 < th dose independent rect. 16 15
578 355.98 radiation 30 1440 > th dose independent rect. 7 1
644 356.48 radiation 20 1440 < th dose independent rect. 16 12
688 356.91 radiation 20 1440 < th dose independent rect. 16 4
730 357.33 temperature 30 1440 < th dose independent rect. 16 12
732 357.35 temperature 30 1440 < th dose independent rect. 16 5
742 357.45 temperature 30 1440 < th dose independent rect. 16 15
764 357.56 humidity 50 4320 > th dose independent rect. 13 4
767 357.62 temperature 30 1440 > th dose independent rect. 9 10
782 357.68 temperature 30 1440 < th dose independent rect. 9 19
784 357.70 temperature 30 1440 < th dose independent rect. 9 16
788 357.71 temperature 30 1440 < th dose independent rect. 9 12
789 357.71 temperature 30 1440 < th dose independent rect. 9 22
790 357.72 temperature 30 1440 < th dose independent rect. 9 10
833 358.10 humidity 70 1440 > th dose independent rect. 18 13
856 358.26 humidity 70 1440 < th dose dependent sin 12 NA
857 358.29 temperature 30 1440 < th dose independent rect. 9 3
860 358.36 temperature 30 1440 < th dose independent rect. 6 22
862 358.37 temperature 30 1440 < th dose independent rect. 6 19
864 358.37 temperature 30 1440 < th dose independent rect. 24 19
866 358.37 temperature 30 1440 < th dose independent rect. 24 21
879 358.39 humidity 70 1440 > th dose independent rect. 18 3
881 358.39 temperature 30 1440 < th dose independent rect. 6 15
889 358.40 temperature 30 1440 < th dose independent no NA NA
892 358.40 temperature 30 1440 < th dose independent rect. 6 13
903 358.40 temperature 30 1440 < th dose independent rect. 2 23
904 358.40 temperature 30 1440 < th dose independent rect. 20 23
909 358.41 temperature 30 1440 < th dose independent rect. 2 19
916 358.42 humidity 70 1440 > th dose independent rect. 18 5
922 358.42 temperature 30 1440 < th dose independent rect. 2 17
981 358.66 temperature 30 1440 > th dose independent no NA NA