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Os09g0493700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CUC2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.81 (0.0171) R2 : 0.259
β1 : 0.712 (0.0627) R2dD : 0.217 R2D : 0.134
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.278 (0.0366) R2dN8 : 0.126 R2N8 : 0.0419
σ : 0.322
deviance : 47.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.55 0.303 9.82 0.784 0.173 0.543 -0.378 0.136 0.227 3.15 51 806 -- --
41.56 0.3 9.82 0.789 0.176 0.558 -0.376 -- 0.225 3.07 51.92 806 -- --
41.97 0.302 9.82 0.795 0.186 0.53 -- 0.339 0.228 3.38 52 913 -- --
42.04 0.302 9.82 0.798 0.173 0.578 -- -- 0.227 3.04 51.45 810 -- --
43.5 0.307 9.83 0.735 -- 0.319 -- 0.797 0.228 -- 55 852 -- --
45.52 0.316 9.81 0.7 0.161 -- -0.385 -- 0.271 3.77 -- -- -- --
45.91 0.317 9.81 0.706 0.164 -- -- -- 0.273 4.45 -- -- -- --
43.68 0.308 9.82 0.796 -- 0.536 -- -- 0.23 -- 51 786 -- --
57.53 0.353 9.83 -- 0.184 0.269 -- -- 0.154 3.56 54.21 869 -- --
47.35 0.322 9.81 0.712 -- -- -- -- 0.278 -- -- -- -- --
59.05 0.359 9.83 -- 0.177 -- -- -- 0.195 4.36 -- -- -- --
56.75 0.351 9.82 -- -- 0.216 -- -- 0.206 -- 83.45 248 -- --
60.74 0.364 9.83 -- -- -- -- -- 0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.14 humidity 80.0 1440 > th dose dependent rect. 11 3
2 41.16 humidity 80.0 1440 > th dose independent rect. 11 3
3 41.28 humidity 80.0 720 > th dose independent rect. 12 1
4 41.28 humidity 90.0 720 < th dose dependent rect. 15 3
6 41.35 humidity 50.0 720 > th dose independent rect. 10 21
7 41.36 humidity 80.0 1440 < th dose independent rect. 11 3
9 41.39 radiation 1.0 720 < th dose independent rect. 8 15
10 41.42 wind 7.0 720 < th dose independent rect. 15 3
12 41.43 precipitation 0.1 720 < th dose independent rect. 13 15
14 41.43 precipitation 0.1 720 < th dose dependent rect. 13 15
16 41.46 radiation 10.0 720 < th dose dependent rect. 14 9
18 41.49 humidity 60.0 720 < th dose independent rect. 15 20
21 41.52 wind 7.0 720 < th dose independent rect. 14 5
25 41.53 humidity 60.0 720 < th dose dependent rect. 15 21
29 41.56 radiation 10.0 720 < th dose dependent rect. 10 13
36 41.62 humidity 50.0 720 > th dose independent rect. 4 17
42 41.64 radiation 1.0 720 < th dose dependent rect. 8 15
43 41.64 humidity 70.0 720 < th dose dependent rect. 15 19
49 41.67 radiation 1.0 270 > th dose independent rect. 6 23
52 41.68 radiation 1.0 270 > th dose independent rect. 6 13
62 41.69 wind 5.0 90 < th dose independent rect. 15 13
63 41.69 wind 7.0 720 < th dose independent rect. 14 14
67 41.70 precipitation 0.1 720 < th dose independent rect. 16 9
71 41.70 humidity 50.0 720 < th dose dependent sin 10 NA
72 41.70 precipitation 0.1 720 < th dose dependent rect. 16 9
74 41.71 precipitation 0.1 720 < th dose independent rect. 23 20
76 41.71 precipitation 0.1 720 < th dose dependent rect. 23 20
94 41.77 humidity 80.0 720 < th dose independent rect. 16 2
95 41.77 humidity 50.0 720 > th dose independent rect. 18 23
96 41.77 wind 9.0 720 < th dose dependent rect. 15 3
100 41.78 radiation 10.0 720 < th dose dependent sin 17 NA
123 41.83 precipitation 0.1 720 < th dose independent rect. 7 21
128 41.83 humidity 50.0 720 > th dose dependent rect. 3 19
130 41.83 precipitation 0.1 720 < th dose dependent rect. 7 21
142 41.85 humidity 80.0 720 < th dose dependent rect. 14 11
151 41.86 humidity 80.0 720 < th dose dependent rect. 14 9
152 41.86 radiation 1.0 720 < th dose dependent rect. 8 9
158 41.87 humidity 60.0 720 < th dose independent sin 11 NA
159 41.87 radiation 1.0 720 < th dose independent sin 19 NA
163 41.87 humidity 80.0 720 > th dose independent rect. 3 18
175 41.88 humidity 50.0 720 < th dose independent sin 9 NA
179 41.88 wind 7.0 720 < th dose independent rect. 16 9
212 41.90 humidity 50.0 720 > th dose independent rect. 1 23
233 41.93 radiation 10.0 720 < th dose dependent rect. 11 19
238 41.94 radiation 10.0 720 < th dose dependent rect. 13 17
269 41.99 humidity 50.0 720 > th dose independent rect. 10 14
275 41.99 humidity 50.0 720 > th dose dependent rect. 13 9
282 42.00 humidity 80.0 720 > th dose independent rect. 4 14
303 42.02 humidity 80.0 720 > th dose independent sin 23 NA
308 42.02 humidity 50.0 720 > th dose dependent rect. 11 12
310 42.02 humidity 50.0 720 > th dose dependent rect. 11 19
370 42.07 humidity 50.0 720 > th dose independent no NA NA
373 42.07 humidity 50.0 720 > th dose dependent sin 17 NA
374 42.07 humidity 80.0 720 < th dose dependent sin 15 NA
403 42.08 humidity 90.0 720 < th dose dependent sin 17 NA
455 42.12 humidity 80.0 720 < th dose independent rect. 11 7
456 42.12 humidity 80.0 720 < th dose independent rect. 9 9
468 42.13 radiation 10.0 1440 < th dose independent rect. 19 10
485 42.15 radiation 10.0 720 < th dose independent rect. 14 1
498 42.15 radiation 1.0 270 < th dose dependent rect. 1 23
554 42.20 humidity 50.0 720 < th dose independent no NA NA
556 42.20 humidity 50.0 720 < th dose independent rect. 10 8
591 42.20 humidity 50.0 720 > th dose independent rect. 2 15
730 42.21 radiation 1.0 270 < th dose independent rect. 7 23
740 42.21 humidity 70.0 90 > th dose dependent rect. 4 23
756 42.23 humidity 50.0 720 > th dose independent sin 1 NA
765 42.23 radiation 1.0 270 < th dose independent rect. 1 23
773 42.23 humidity 90.0 720 < th dose dependent rect. 11 17
791 42.24 radiation 1.0 270 < th dose independent rect. 9 21
806 42.25 humidity 90.0 720 < th dose dependent rect. 11 14
813 42.26 humidity 50.0 720 < th dose independent sin 19 NA
816 42.26 humidity 80.0 720 < th dose independent sin 21 NA
819 42.26 radiation 1.0 720 > th dose independent sin 18 NA
868 42.27 humidity 50.0 720 > th dose independent rect. 11 10
897 42.28 wind 1.0 4320 < th dose independent rect. 21 2
903 42.28 humidity 50.0 720 > th dose independent rect. 23 23
904 42.28 radiation 1.0 270 < th dose independent rect. 19 23
934 42.30 humidity 50.0 720 > th dose independent sin 9 NA
935 42.30 humidity 50.0 720 > th dose independent sin 15 NA
937 42.30 humidity 60.0 720 < th dose independent rect. 15 3
938 42.30 radiation 10.0 1440 < th dose independent rect. 2 3
940 42.30 humidity 50.0 720 > th dose independent rect. 10 7
961 42.31 humidity 60.0 720 < th dose independent rect. 15 5
990 42.31 humidity 90.0 720 < th dose dependent rect. 9 19
996 42.32 precipitation 0.1 720 < th dose independent rect. 1 18