Os09g0493400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ferritin/ribonucleotide reductase-like family protein.
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Os09g0493400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ferritin/ribonucleotide reductase-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.21 | 0.498 | 8.09 | -0.333 | 0.815 | -0.246 | -0.978 | -3.52 | -0.414 | 12.5 | 0.2595 | 5459 | -- | -- |
| 103.51 | 0.474 | 8.05 | 0.114 | 0.824 | -1.12 | -0.918 | -- | -0.452 | 12.6 | 1.147 | 22325 | -- | -- |
| 114.47 | 0.498 | 8.15 | -0.668 | 0.886 | -0.172 | -- | -3.48 | -0.391 | 12.7 | 0.5 | 11121 | -- | -- |
| 107.04 | 0.482 | 8.05 | 0.0578 | 0.851 | -1.18 | -- | -- | -0.486 | 12.8 | 0.9777 | 22130 | -- | -- |
| 154.7 | 0.579 | 8.13 | -0.464 | -- | -0.42 | -- | -2.96 | -0.47 | -- | 0.9313 | 14042 | -- | -- |
| 136.85 | 0.548 | 8.02 | -0.586 | 0.841 | -- | -0.869 | -- | -0.364 | 12.6 | -- | -- | -- | -- |
| 140.04 | 0.554 | 8.02 | -0.619 | 0.844 | -- | -- | -- | -0.368 | 12.7 | -- | -- | -- | -- |
| 151.64 | 0.574 | 8.06 | 0.012 | -- | -1.15 | -- | -- | -0.496 | -- | 1.145 | 22280 | -- | -- |
| 107.1 | 0.482 | 8.05 | -- | 0.843 | -1.15 | -- | -- | -0.48 | 12.8 | 0.9869 | 22127 | -- | -- |
| 184.65 | 0.635 | 8.04 | -0.649 | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
| 150.14 | 0.573 | 8 | -- | 0.854 | -- | -- | -- | -0.299 | 12.7 | -- | -- | -- | -- |
| 151.65 | 0.574 | 8.06 | -- | -- | -1.15 | -- | -- | -0.496 | -- | 1.15 | 22279 | -- | -- |
| 195.76 | 0.653 | 8.02 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 104.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 104.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 104.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 5 | 107.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 11 | 107.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 17 | 108.28 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 22 | 108.42 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 36 | 108.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 44 | 108.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 54 | 108.80 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 65 | 108.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 67 | 108.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 68 | 108.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 77 | 108.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 136 | 109.40 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 183 | 109.87 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 208 | 110.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 223 | 110.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 225 | 110.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 229 | 110.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 260 | 110.36 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 261 | 110.36 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 274 | 110.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 303 | 110.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 320 | 110.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 322 | 110.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 325 | 110.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 389 | 110.91 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 409 | 111.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 438 | 111.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 459 | 111.34 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 479 | 111.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 495 | 111.58 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 496 | 111.58 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 498 | 111.62 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 502 | 111.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 505 | 111.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 514 | 111.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 552 | 111.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 554 | 111.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 674 | 112.22 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 746 | 112.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 771 | 112.74 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 802 | 113.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 814 | 113.14 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 820 | 113.22 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 867 | 113.48 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 871 | 113.53 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 885 | 113.59 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 954 | 113.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 958 | 113.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 961 | 113.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 978 | 113.93 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 20 |
| 988 | 113.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 995 | 113.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 20 |
| 999 | 113.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 20 |