Os09g0491100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-primeverosidase (EC 3.2.1.149).
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Os09g0491100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-primeverosidase (EC 3.2.1.149).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 359.05 | 0.89 | 3.71 | -1.7 | 0.56 | 6.58 | -0.893 | 11 | 0.0771 | 6.28 | 8.71 | 593 | -- | -- |
| 369.6 | 0.895 | 3.59 | -1.7 | 0.588 | 5.16 | -1.53 | -- | 0.203 | 6.29 | 8.792 | 490 | -- | -- |
| 360.01 | 0.884 | 3.71 | -1.7 | 0.572 | 6.75 | -- | 11.7 | 0.0705 | 6.28 | 8.7 | 570 | -- | -- |
| 364.37 | 0.889 | 3.66 | -1.79 | 0.615 | 4.28 | -- | -- | 0.123 | 5.74 | 8.8 | 575 | -- | -- |
| 375.37 | 0.902 | 3.75 | -1.66 | -- | 7.55 | -- | 16.5 | 0.0736 | -- | 8.723 | 570 | -- | -- |
| 430.16 | 0.972 | 3.7 | -2.18 | 0.422 | -- | -0.345 | -- | -0.0519 | 5.46 | -- | -- | -- | -- |
| 430.45 | 0.972 | 3.69 | -2.18 | 0.42 | -- | -- | -- | -0.0503 | 5.53 | -- | -- | -- | -- |
| 379.21 | 0.907 | 3.67 | -1.84 | -- | 3.7 | -- | -- | 0.104 | -- | 8.8 | 616 | -- | -- |
| 444.96 | 0.982 | 3.59 | -- | 0.589 | 4.72 | -- | -- | 0.347 | 6.54 | 7.9 | 596 | -- | -- |
| 439.63 | 0.98 | 3.7 | -2.16 | -- | -- | -- | -- | -0.0401 | -- | -- | -- | -- | -- |
| 555.47 | 1.1 | 3.64 | -- | 0.385 | -- | -- | -- | 0.192 | 5.77 | -- | -- | -- | -- |
| 456.07 | 0.995 | 3.61 | -- | -- | 3.97 | -- | -- | 0.338 | -- | 8.8 | 915 | -- | -- |
| 563.18 | 1.11 | 3.65 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 355.92 | wind | 9 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 5 | 356.72 | wind | 9 | 270 | > th | dose independent | sin | 11 | NA |
| 7 | 357.26 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 9 | 357.51 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 23 |
| 10 | 357.54 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 15 | 357.74 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 31 | 359.53 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 16 |
| 38 | 359.86 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 8 |
| 46 | 360.03 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 53 | 360.91 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 57 | 361.17 | wind | 9 | 270 | < th | dose independent | sin | 10 | NA |
| 62 | 362.05 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 23 |
| 65 | 362.19 | wind | 9 | 720 | > th | dose independent | sin | 0 | NA |
| 68 | 362.39 | wind | 9 | 720 | > th | dose dependent | sin | 1 | NA |
| 69 | 362.41 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 79 | 362.48 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 86 | 362.66 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 87 | 362.66 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 17 |
| 102 | 362.66 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 22 |
| 124 | 362.75 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 133 | 362.76 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 14 |
| 176 | 363.04 | wind | 9 | 720 | < th | dose independent | sin | 0 | NA |
| 186 | 363.10 | humidity | 70 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 228 | 363.50 | wind | 7 | 270 | > th | dose dependent | sin | 15 | NA |
| 230 | 363.51 | wind | 9 | 720 | > th | dose dependent | no | NA | NA |
| 246 | 363.51 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 264 | 363.56 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 350 | 363.80 | wind | 7 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 369 | 363.86 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 3 |
| 375 | 363.96 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 405 | 364.10 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 1 |
| 410 | 364.12 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 492 | 364.81 | humidity | 80 | 1440 | > th | dose dependent | rect. | 4 | 21 |
| 545 | 365.24 | wind | 9 | 720 | > th | dose independent | sin | 8 | NA |
| 572 | 365.49 | wind | 9 | 720 | > th | dose dependent | sin | 8 | NA |
| 583 | 365.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 688 | 367.04 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 698 | 367.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 743 | 367.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 23 |