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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0490400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0408) R2 : 5.42e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00427 (0.0859) R2dN8 : 6.99e-06 R2N8 : 5.42e-06
σ : 0.768
deviance : 271.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.42 0.735 2.86 -0.125 0.175 -2.54 -0.354 6.9 0.00269 11.6 1015 1442 7.95 2.98
256.71 0.746 2.86 -0.158 0.16 -2.33 -0.466 -- -0.000733 11.7 1015 1440 7.96 2.98
244.96 0.729 2.86 -0.136 0.176 -2.54 -- 6.97 0.00116 11.4 1015 1441 7.93 3.03
257.49 0.747 2.86 -0.173 0.128 -2.33 -- -- -0.00119 12.9 1015 1437 7.94 3.1
246.72 0.732 2.86 -0.142 -- -2.59 -- 6.93 0.00162 -- 1015 1440 7.97 3.05
267.3 0.766 2.86 -0.155 0.178 -- -0.449 -- -0.0115 11.7 -- -- -- --
268.17 0.767 2.86 -0.173 0.18 -- -- -- -0.0134 11.7 -- -- -- --
258.4 0.749 2.86 -0.177 -- -2.37 -- -- -0.00768 -- 1015 1435 8.05 3.19
258.29 0.749 2.86 -- 0.13 -2.33 -- -- 0.0142 13 1015 1437 7.93 3.15
270.21 0.768 2.87 -0.178 -- -- -- -- -0.0155 -- -- -- -- --
268.96 0.767 2.86 -- 0.182 -- -- -- 0.00594 11.8 -- -- -- --
259.22 0.75 2.86 -- -- -2.37 -- -- 0.0116 -- 1015 1435 8.04 3.19
271.05 0.768 2.86 -- -- -- -- -- 0.00427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.62 atmosphere 1015.0 1440 < th dose independent rect. 8 3
3 244.67 atmosphere 1015.0 1440 < th dose independent rect. 4 7
7 244.98 atmosphere 1015.0 1440 > th dose independent rect. 10 1
22 244.98 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
46 247.56 humidity 90.0 90 > th dose dependent rect. 20 1
47 248.21 atmosphere 1005.0 90 < th dose independent rect. 20 1
48 248.53 wind 5.0 10 > th dose independent rect. 21 1
55 250.43 humidity 80.0 10 < th dose dependent rect. 22 1
81 251.71 humidity 80.0 10 < th dose independent rect. 21 1
93 252.46 temperature 20.0 10 < th dose dependent rect. 22 1
103 253.11 wind 3.0 10 > th dose dependent rect. 21 1
115 254.08 humidity 90.0 30 > th dose dependent rect. 13 10
186 256.32 humidity 90.0 90 > th dose independent rect. 21 1
187 256.35 atmosphere 1010.0 30 < th dose independent rect. 12 1
190 256.39 temperature 10.0 1440 > th dose independent rect. 13 1
194 256.39 humidity 60.0 30 > th dose independent rect. 12 1
195 256.39 atmosphere 995.0 1440 > th dose independent rect. 13 1
198 256.39 temperature 10.0 1440 > th dose independent rect. 14 23
205 256.53 humidity 90.0 10 > th dose independent rect. 21 1
212 256.56 temperature 20.0 10 < th dose independent rect. 22 1
245 256.84 temperature 20.0 30 > th dose dependent rect. 12 1
250 256.95 temperature 25.0 30 > th dose independent rect. 12 1
252 256.99 radiation 30.0 30 > th dose independent rect. 12 1
255 257.02 wind 3.0 30 > th dose independent rect. 10 1
258 257.05 atmosphere 1015.0 30 < th dose dependent rect. 12 1
261 257.12 temperature 20.0 10 < th dose dependent rect. 6 17
270 257.25 wind 7.0 30 < th dose independent rect. 12 1
272 257.25 temperature 20.0 10 < th dose dependent rect. 9 14
275 257.27 temperature 20.0 10 < th dose dependent rect. 11 12
282 257.31 humidity 80.0 30 < th dose independent rect. 12 1
285 257.35 radiation 10.0 30 > th dose dependent rect. 12 1
289 257.39 humidity 50.0 30 > th dose dependent rect. 12 1
317 257.66 temperature 20.0 10 < th dose dependent rect. 15 8
336 257.79 temperature 10.0 30 > th dose independent rect. 12 1
338 257.79 atmosphere 995.0 30 > th dose independent rect. 12 1
341 257.79 precipitation 0.1 30 < th dose independent rect. 12 1
342 257.79 temperature 10.0 30 > th dose independent rect. 13 23
343 257.79 precipitation 0.1 30 < th dose dependent rect. 12 1
349 257.84 wind 1.0 30 > th dose independent rect. 12 1
352 257.87 wind 9.0 30 < th dose dependent rect. 12 1
355 257.90 temperature 20.0 270 < th dose independent rect. 9 12
368 258.08 atmosphere 1005.0 10 > th dose dependent rect. 10 1
387 258.27 atmosphere 1005.0 10 > th dose independent rect. 10 1
388 258.27 wind 1.0 30 > th dose dependent rect. 12 1
396 258.32 temperature 20.0 270 < th dose independent rect. 13 8
403 258.38 temperature 30.0 30 < th dose independent rect. 12 1
419 258.48 atmosphere 995.0 30 > th dose dependent rect. 12 1
438 258.69 radiation 40.0 10 < th dose independent rect. 10 1
439 258.70 atmosphere 1010.0 30 < th dose dependent rect. 21 1
466 258.84 wind 7.0 30 < th dose independent rect. 21 1
489 258.95 atmosphere 1010.0 270 > th dose independent rect. 5 1
507 258.99 atmosphere 1010.0 90 > th dose independent rect. 8 1
580 259.09 temperature 20.0 270 < th dose dependent rect. 12 7
590 259.20 temperature 20.0 270 < th dose dependent rect. 14 5
596 259.24 wind 1.0 30 > th dose dependent rect. 10 1
599 259.26 precipitation 0.1 30 < th dose independent rect. 21 1
601 259.26 precipitation 0.1 30 < th dose dependent rect. 21 1
606 259.29 atmosphere 995.0 30 > th dose independent rect. 22 23
609 259.31 temperature 30.0 10 < th dose independent rect. 10 1
628 259.34 humidity 90.0 30 < th dose dependent rect. 12 1
633 259.37 temperature 30.0 90 > th dose independent rect. 10 1
635 259.38 radiation 10.0 4320 < th dose dependent rect. 22 1
654 259.41 temperature 10.0 1440 > th dose independent rect. 22 1
657 259.41 temperature 30.0 1440 < th dose independent rect. 22 1
661 259.41 humidity 50.0 1440 > th dose independent rect. 22 1
669 259.41 atmosphere 995.0 1440 > th dose independent rect. 22 1
670 259.41 radiation 1.0 1440 < th dose independent rect. 22 1
691 259.41 temperature 10.0 1440 > th dose independent rect. 23 23
703 259.43 radiation 1.0 30 < th dose dependent rect. 21 1
704 259.44 temperature 10.0 30 > th dose independent rect. 21 1
707 259.44 humidity 50.0 30 > th dose independent rect. 21 1
710 259.44 atmosphere 995.0 30 > th dose independent rect. 21 1
713 259.44 radiation 1.0 30 < th dose independent rect. 21 1
718 259.44 temperature 10.0 30 > th dose independent rect. 22 23
724 259.45 temperature 30.0 10 < th dose independent rect. 11 23
745 259.51 radiation 10.0 720 < th dose dependent rect. 11 1
754 259.55 radiation 20.0 10 < th dose independent rect. 22 12
755 259.55 radiation 20.0 10 < th dose independent rect. 22 15
763 259.60 radiation 20.0 10 > th dose independent rect. 10 1
779 259.75 wind 7.0 90 < th dose independent rect. 9 13
799 259.91 precipitation 0.1 30 < th dose independent rect. 22 23
801 259.91 precipitation 0.1 30 < th dose dependent rect. 22 23
804 259.92 humidity 50.0 30 > th dose dependent rect. 10 1
809 259.96 temperature 25.0 270 > th dose dependent rect. 10 1
810 259.97 humidity 60.0 30 > th dose independent rect. 10 1
812 259.98 temperature 20.0 30 > th dose independent rect. 10 1
822 260.02 humidity 80.0 30 < th dose independent rect. 10 1
826 260.05 wind 5.0 30 < th dose independent rect. 10 1
834 260.07 atmosphere 995.0 30 > th dose dependent rect. 21 1
836 260.08 temperature 10.0 30 > th dose independent rect. 10 1
840 260.08 atmosphere 995.0 30 > th dose independent rect. 10 1
841 260.08 atmosphere 1015.0 30 < th dose independent rect. 10 1
843 260.08 precipitation 0.1 30 < th dose independent rect. 10 1
844 260.08 temperature 10.0 30 > th dose independent rect. 11 23
845 260.08 precipitation 0.1 30 < th dose dependent rect. 10 1
864 260.20 wind 5.0 270 > th dose independent rect. 18 1
877 260.25 temperature 10.0 30 > th dose dependent rect. 10 1
878 260.25 radiation 1.0 30 > th dose dependent rect. 10 1
879 260.26 radiation 40.0 30 < th dose dependent rect. 10 1
884 260.29 radiation 20.0 10 < th dose dependent rect. 22 23
890 260.31 wind 9.0 30 < th dose dependent rect. 10 1
893 260.33 humidity 90.0 30 < th dose dependent rect. 10 1
906 260.39 wind 9.0 30 < th dose independent rect. 22 23
909 260.40 wind 1.0 30 < th dose independent rect. 10 1
912 260.40 temperature 10.0 1440 > th dose independent rect. 11 1
920 260.40 atmosphere 995.0 1440 > th dose independent rect. 11 1
926 260.40 precipitation 0.1 1440 < th dose independent rect. 11 1
929 260.40 temperature 10.0 1440 > th dose independent rect. 12 23
932 260.40 wind 1.0 30 < th dose dependent rect. 10 1
935 260.40 precipitation 0.1 1440 < th dose dependent rect. 11 1
958 260.50 humidity 70.0 10 > th dose dependent rect. 22 23
990 260.55 precipitation 0.1 1440 < th dose independent rect. 22 1
991 260.55 precipitation 0.1 1440 < th dose dependent rect. 22 1