Os09g0490200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EIL3.
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Os09g0490200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to EIL3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.41 | 0.306 | 8.61 | 0.555 | 0.557 | 0.543 | -0.968 | -0.0489 | -0.0693 | 4.28 | 1010 | 5957 | -- | -- |
| 42.42 | 0.303 | 8.61 | 0.544 | 0.557 | 0.546 | -0.967 | -- | -0.0713 | 4.28 | 1010 | 5955 | -- | -- |
| 44.95 | 0.312 | 8.61 | 0.533 | 0.552 | 0.537 | -- | 0.129 | -0.0778 | 4.36 | 1010 | 6798 | -- | -- |
| 44.84 | 0.312 | 8.6 | 0.567 | 0.553 | 0.517 | -- | -- | -0.0515 | 4.34 | 1010 | 8700 | -- | -- |
| 61.31 | 0.365 | 8.61 | 0.564 | -- | 0.474 | -- | 0.0292 | -0.0489 | -- | 1010 | 7320 | -- | -- |
| 51.06 | 0.335 | 8.63 | 0.357 | 0.54 | -- | -0.953 | -- | -0.173 | 4.25 | -- | -- | -- | -- |
| 53.56 | 0.343 | 8.63 | 0.367 | 0.536 | -- | -- | -- | -0.167 | 4.4 | -- | -- | -- | -- |
| 61.08 | 0.364 | 8.61 | 0.521 | -- | 0.692 | -- | -- | -0.0406 | -- | 1008 | 14992 | -- | -- |
| 51.41 | 0.334 | 8.62 | -- | 0.562 | 0.491 | -- | -- | -0.124 | 4.23 | 1008 | 11485 | -- | -- |
| 68.98 | 0.388 | 8.63 | 0.388 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 57.11 | 0.353 | 8.64 | -- | 0.543 | -- | -- | -- | -0.208 | 4.38 | -- | -- | -- | -- |
| 67.24 | 0.382 | 8.65 | -- | -- | 0.575 | -- | -- | -0.133 | -- | 1007 | 14870 | -- | -- |
| 72.95 | 0.399 | 8.64 | -- | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.51 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 2 | 40.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 5 | 40.79 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 7 | 40.98 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 8 | 41.12 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 9 | 41.12 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 12 | 41.20 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 14 | 41.27 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 31 | 41.33 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 32 | 41.33 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 50 | 41.47 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 59 | 41.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 60 | 41.53 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 69 | 41.59 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 73 | 41.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 79 | 41.62 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 95 | 41.66 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 121 | 41.70 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 139 | 41.71 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 143 | 41.72 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 149 | 41.72 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 159 | 41.73 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 160 | 41.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 162 | 41.74 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 166 | 41.74 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 170 | 41.75 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 184 | 41.76 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 186 | 41.76 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 218 | 41.78 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 341 | 41.86 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 348 | 41.86 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 385 | 41.88 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 386 | 41.88 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 463 | 41.92 | humidity | 60.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 514 | 41.93 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 570 | 41.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 618 | 41.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 619 | 41.98 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 639 | 41.98 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 655 | 41.99 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 676 | 42.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 677 | 42.00 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 702 | 42.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 706 | 42.01 | humidity | 60.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 708 | 42.01 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 777 | 42.02 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 778 | 42.02 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 781 | 42.03 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 827 | 42.04 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 830 | 42.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 833 | 42.04 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 859 | 42.05 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 882 | 42.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 886 | 42.06 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 917 | 42.07 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 922 | 42.07 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 948 | 42.07 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 949 | 42.07 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 952 | 42.07 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 955 | 42.08 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 958 | 42.08 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 959 | 42.08 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 998 | 42.08 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 2 | 3 |