Os09g0489800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0489800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.51	(0.0302)	R²	:	0.646
β₁	:	2.61	(0.114)	R²_dD	:	0.449	R²_D	:	0.194
β₂	:	0.819	(0.073)	R²_dC	:	0.0973	R²_C	:	0.0513
β₃	:	0.931	(0.0918)	R²_dE	:	0.0849	R²_E	:	-0.0788
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.07	(0.065)	R²_dN8	:	0.286	R²_N8	:	0.0849
σ	:	0.564
deviance	:	146.85
__

_____

C
peak time of C	:	1.85
E
wheather	:	temperature
threshold	:	29.2
memory length	:	1700
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
146.8	0.569	5.54	2.49	0.825	0.903	-0.368	0.462	0.968	1.83	29.6	1756	--	--
146.51	0.564	5.52	2.59	0.843	0.932	-0.386	--	1.05	1.84	29.2	1710	--	--
147.33	0.565	5.54	2.51	0.825	0.908	--	0.436	0.971	1.83	29.6	1755	--	--
146.85	0.564	5.51	2.61	0.819	0.931	--	--	1.07	1.85	29.2	1700	--	--
184.27	0.636	5.5	2.56	--	0.823	--	-0.33	1.06	--	29.22	1754	--	--
178.89	0.627	5.53	2.33	0.846	--	-0.427	--	0.98	2.24	--	--	--	--
179.56	0.628	5.52	2.34	0.846	--	--	--	0.982	2.25	--	--	--	--
184.13	0.635	5.5	2.53	--	0.753	--	--	1.07	--	29.09	1743	--	--
314.74	0.826	5.59	--	0.734	0.577	--	--	0.762	1.16	28.84	444	--	--
222.12	0.696	5.52	2.38	--	--	--	--	1	--	--	--	--	--
323.86	0.842	5.58	--	0.89	--	--	--	0.722	2.3	--	--	--	--
337.12	0.855	5.57	--	--	0.793	--	--	0.782	--	28.78	202	--	--
370.97	0.899	5.58	--	--	--	--	--	0.739	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	138.19	humidity	70	14400	< th	dose dependent	rect.	18	13
2	138.21	humidity	70	14400	< th	dose dependent	rect.	18	4
15	139.47	radiation	10	14400	> th	dose dependent	rect.	17	13
16	139.48	humidity	60	14400	< th	dose dependent	rect.	16	4
28	139.50	wind	3	43200	> th	dose dependent	rect.	5	3
31	139.67	radiation	10	14400	> th	dose dependent	rect.	17	1
47	140.14	humidity	70	14400	< th	dose independent	rect.	19	13
48	140.15	wind	5	43200	< th	dose independent	rect.	6	2
49	140.15	humidity	70	14400	< th	dose independent	rect.	18	4
58	140.21	wind	5	43200	> th	dose independent	rect.	6	2
77	140.56	radiation	20	4320	< th	dose independent	rect.	16	16
86	140.90	humidity	70	14400	> th	dose independent	rect.	18	4
87	140.90	humidity	70	14400	> th	dose independent	rect.	18	6
89	140.92	humidity	70	14400	> th	dose independent	rect.	18	11
97	140.98	wind	5	43200	< th	dose independent	rect.	5	5
103	141.05	wind	9	43200	< th	dose dependent	rect.	3	5
104	141.06	wind	5	43200	> th	dose independent	rect.	5	5
107	141.08	radiation	30	14400	> th	dose independent	rect.	7	1
122	141.11	radiation	10	14400	< th	dose independent	rect.	17	1
127	141.18	radiation	20	4320	< th	dose independent	rect.	6	2
131	141.25	radiation	20	4320	< th	dose independent	rect.	3	5
137	141.29	radiation	20	4320	< th	dose independent	rect.	21	11
146	141.33	radiation	10	14400	< th	dose independent	rect.	17	6
152	141.37	radiation	10	14400	< th	dose independent	rect.	17	3
175	141.56	wind	9	43200	< th	dose dependent	rect.	4	2
196	141.62	wind	5	43200	> th	dose independent	rect.	9	1
218	141.77	humidity	80	14400	> th	dose dependent	rect.	21	2
241	141.95	wind	5	43200	< th	dose independent	rect.	9	1
266	142.21	wind	9	43200	< th	dose independent	rect.	20	10
338	142.51	wind	9	43200	< th	dose dependent	rect.	7	1
360	142.59	wind	9	43200	> th	dose independent	rect.	20	10
408	142.79	wind	3	43200	> th	dose dependent	sin	6	NA
472	143.02	wind	7	43200	> th	dose dependent	rect.	19	11
527	143.19	wind	5	43200	< th	dose independent	sin	5	NA
531	143.25	wind	5	43200	> th	dose independent	sin	5	NA
535	143.27	humidity	50	14400	> th	dose independent	rect.	16	18
632	143.75	wind	5	43200	> th	dose dependent	rect.	9	1
636	143.77	humidity	50	14400	< th	dose independent	rect.	16	19
645	143.80	wind	5	43200	> th	dose dependent	rect.	19	18
648	143.81	wind	3	43200	> th	dose dependent	rect.	20	14
686	143.93	radiation	20	4320	> th	dose dependent	rect.	16	16
732	144.08	radiation	1	1440	> th	dose dependent	rect.	17	14
748	144.16	wind	7	43200	> th	dose independent	rect.	19	16
749	144.16	wind	7	43200	< th	dose independent	rect.	19	16
767	144.21	radiation	20	4320	> th	dose dependent	rect.	15	18
802	144.32	humidity	50	14400	> th	dose dependent	rect.	21	1
865	144.50	radiation	10	1440	< th	dose dependent	rect.	17	14
943	144.66	humidity	50	14400	< th	dose independent	rect.	17	17
958	144.69	wind	9	43200	< th	dose dependent	sin	6	NA
978	144.71	radiation	40	1440	< th	dose dependent	rect.	17	14