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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0489200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.59 (0.0388) R2 : 0.918
β1 : -2.78 (0.142) R2dD : 0.0721 R2D : 0.0753
β2 : 3.37 (0.102) R2dC : 0.202 R2C : 0.319
β3 : -5.61 (0.107) R2dE : 0.507 R2E : 0.634
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.541 (0.0828) R2dN8 : 0.0103 R2N8 : 0.00632
σ : 0.725
deviance : 242.05
__
_____
C
peak time of C : 17
E
wheather : temperature
threshold : 9.067
memory length : 259
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.08
open length of G : 8.76

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.14 0.714 6.59 -2.71 3.4 -5.69 1.72 1.6 -0.523 17.1 9.985 257 3.05 8.88
235.82 0.715 6.6 -2.79 3.4 -5.64 1.57 -- -0.528 17.1 9.666 257 3.12 8.78
237.99 0.719 6.59 -2.71 3.45 -5.66 -- 1.5 -0.523 17.1 9.87 258 3.15 8.72
242.05 0.725 6.59 -2.78 3.37 -5.61 -- -- -0.541 17 9.067 259 3.08 8.76
381.1 0.909 6.47 -2.81 -- -6.52 -- 1.51 -0.455 -- 4.653 301 0.583 10.2
473.21 1.02 6.77 -3.14 6.32 -- 0.909 -- -0.778 20 -- -- -- --
475.65 1.02 6.76 -3.16 6.32 -- -- -- -0.777 20 -- -- -- --
377.28 0.905 6.5 -2.73 -- -6.4 -- -- -0.419 -- 4.42 297 0.617 10.3
432 0.968 6.51 -- 2.96 -6.21 -- -- -0.159 16.7 11.65 233 2.65 9.31
2655.18 2.41 6.61 -3.23 -- -- -- -- -0.859 -- -- -- -- --
739.07 1.27 6.69 -- 6.34 -- -- -- -0.425 19.9 -- -- -- --
570.25 1.11 6.41 -- -- -6.51 -- -- -0.0487 -- 6.69 279 0.541 10.5
2929.71 2.53 6.52 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.02 temperature 10.0 270 > th dose dependent rect. 3 9
39 283.15 temperature 10.0 90 > th dose dependent rect. 19 18
42 284.10 temperature 20.0 10 > th dose dependent rect. 20 17
56 287.60 temperature 10.0 270 > th dose dependent rect. 17 19
59 288.66 temperature 20.0 270 > th dose independent rect. 4 8
73 291.76 temperature 20.0 270 > th dose dependent rect. 8 2
195 315.70 temperature 15.0 270 > th dose independent rect. 17 18
200 316.51 precipitation 0.1 270 < th dose independent rect. 17 18
201 316.51 precipitation 0.1 270 < th dose dependent rect. 17 18
203 316.70 wind 9.0 270 < th dose independent rect. 17 18
205 317.27 temperature 10.0 270 > th dose independent rect. 11 6
206 317.27 atmosphere 1015.0 270 < th dose independent rect. 11 6
209 317.45 atmosphere 995.0 270 > th dose independent rect. 17 18
217 318.13 temperature 15.0 270 > th dose independent rect. 16 20
220 318.37 precipitation 0.1 270 < th dose independent rect. 11 6
221 318.37 precipitation 0.1 270 < th dose dependent rect. 11 6
223 318.62 humidity 50.0 270 > th dose independent rect. 17 18
225 319.01 wind 9.0 270 < th dose independent rect. 11 6
239 320.24 atmosphere 1010.0 270 < th dose independent rect. 6 5
242 320.91 temperature 15.0 270 > th dose independent rect. 7 14
247 321.31 humidity 50.0 10 > th dose independent rect. 19 18
248 321.36 temperature 15.0 90 > th dose independent rect. 19 18
255 321.82 wind 9.0 270 < th dose independent rect. 16 20
265 323.00 temperature 10.0 270 > th dose independent rect. 12 4
267 323.00 atmosphere 1015.0 270 < th dose independent rect. 12 4
270 323.03 precipitation 0.1 270 < th dose independent rect. 16 20
271 323.03 precipitation 0.1 270 < th dose dependent rect. 16 20
273 323.14 wind 1.0 270 > th dose independent rect. 11 6
274 323.24 wind 9.0 270 < th dose independent rect. 12 4
277 323.50 precipitation 0.1 270 < th dose independent rect. 12 4
278 323.50 precipitation 0.1 270 < th dose dependent rect. 12 4
283 323.75 temperature 25.0 90 > th dose independent rect. 19 18
292 324.55 atmosphere 1010.0 270 < th dose independent rect. 8 2
306 325.43 atmosphere 995.0 270 > th dose independent rect. 16 20
316 326.16 wind 1.0 270 > th dose independent rect. 12 4
318 326.23 radiation 40.0 270 < th dose independent rect. 17 18
347 327.60 precipitation 0.1 30 < th dose independent rect. 19 18
348 327.60 precipitation 0.1 30 < th dose dependent rect. 19 18
353 327.80 atmosphere 995.0 270 > th dose independent rect. 11 6
357 327.89 atmosphere 995.0 270 > th dose independent rect. 12 4
361 328.12 radiation 1.0 270 > th dose independent rect. 11 6
367 328.41 wind 9.0 270 < th dose independent rect. 15 22
369 328.52 temperature 10.0 270 > th dose independent rect. 13 2
371 328.52 atmosphere 1010.0 270 < th dose independent rect. 13 2
373 328.52 temperature 10.0 270 > th dose independent rect. 15 22
378 328.74 wind 9.0 270 < th dose independent rect. 13 2
379 328.93 wind 7.0 270 < th dose independent rect. 3 9
390 329.38 radiation 1.0 270 > th dose independent rect. 12 4
399 330.00 precipitation 0.1 270 < th dose independent rect. 13 2
400 330.00 precipitation 0.1 270 < th dose dependent rect. 13 2
415 330.57 precipitation 0.1 270 < th dose independent rect. 3 9
416 330.57 precipitation 0.1 270 < th dose dependent rect. 3 9
423 330.62 precipitation 0.1 30 < th dose independent rect. 13 6
424 330.62 precipitation 0.1 30 < th dose dependent rect. 13 6
445 331.32 atmosphere 995.0 270 > th dose independent rect. 13 2
480 332.65 humidity 90.0 270 < th dose independent rect. 12 4
492 333.11 wind 1.0 30 > th dose independent rect. 13 6
498 333.40 radiation 40.0 270 < th dose dependent rect. 21 10
500 333.43 precipitation 0.1 270 < th dose independent rect. 15 22
501 333.43 precipitation 0.1 270 < th dose dependent rect. 15 22
522 334.04 radiation 1.0 270 > th dose independent rect. 13 2
523 334.10 humidity 50.0 270 > th dose independent rect. 3 9
559 335.34 temperature 10.0 270 > th dose independent rect. 21 10
560 335.34 temperature 30.0 270 < th dose independent rect. 21 10
561 335.34 humidity 50.0 270 > th dose independent rect. 21 10
563 335.34 atmosphere 995.0 270 > th dose independent rect. 21 10
564 335.34 radiation 40.0 270 < th dose independent rect. 21 10
572 335.60 wind 1.0 270 > th dose independent rect. 13 2
573 335.60 wind 9.0 270 < th dose independent rect. 21 10
589 336.39 wind 9.0 270 < th dose independent rect. 7 14
595 336.57 atmosphere 995.0 270 > th dose independent rect. 3 9
597 336.57 temperature 10.0 270 > th dose independent rect. 12 15
601 336.85 temperature 10.0 270 > th dose independent rect. 16 7
602 336.85 radiation 40.0 270 < th dose independent rect. 16 7
603 336.85 temperature 10.0 270 > th dose independent rect. 23 17
624 337.72 wind 9.0 270 < th dose independent rect. 16 7
639 338.49 wind 9.0 270 < th dose independent rect. 12 15
644 338.76 temperature 30.0 10 < th dose dependent rect. 24 17
652 339.02 atmosphere 1015.0 270 < th dose independent rect. 23 17
659 339.27 atmosphere 995.0 270 > th dose independent rect. 16 7
671 339.70 humidity 90.0 270 < th dose independent rect. 11 6
672 339.71 wind 9.0 270 < th dose independent rect. 23 17
691 339.97 wind 1.0 270 > th dose independent rect. 16 7
701 340.19 radiation 1.0 270 > th dose independent rect. 17 19
706 340.30 radiation 40.0 270 < th dose dependent rect. 16 7
739 341.13 atmosphere 1015.0 270 < th dose independent rect. 7 14
746 341.29 radiation 40.0 10 < th dose independent rect. 13 6
751 341.34 precipitation 0.1 270 < th dose independent rect. 7 14
752 341.34 precipitation 0.1 270 < th dose dependent rect. 7 14
756 341.53 precipitation 0.1 270 < th dose independent rect. 12 15
757 341.53 precipitation 0.1 270 < th dose dependent rect. 12 15
767 341.87 precipitation 0.1 270 < th dose independent rect. 16 7
768 341.87 precipitation 0.1 270 < th dose dependent rect. 16 7
777 342.23 temperature 30.0 90 < th dose dependent rect. 1 16
791 342.64 temperature 10.0 1440 > th dose independent rect. 14 5
795 342.64 temperature 10.0 1440 > th dose independent rect. 19 19
798 342.64 atmosphere 995.0 1440 > th dose independent rect. 19 19
842 343.61 atmosphere 995.0 270 > th dose independent rect. 23 17
869 344.06 precipitation 0.1 270 < th dose independent rect. 21 10
870 344.06 precipitation 0.1 270 < th dose dependent rect. 21 10
877 344.15 atmosphere 1010.0 90 < th dose independent rect. 18 19
895 344.63 radiation 1.0 90 > th dose independent rect. 13 16
934 345.12 precipitation 0.1 270 < th dose independent rect. 23 17
935 345.12 precipitation 0.1 270 < th dose dependent rect. 23 17
937 345.14 radiation 1.0 270 < th dose independent rect. 22 16
952 345.37 temperature 10.0 270 > th dose dependent rect. 12 4
994 346.30 atmosphere 995.0 270 > th dose independent rect. 17 5
997 346.37 humidity 50.0 270 > th dose independent rect. 12 4
1000 346.43 radiation 1.0 270 < th dose dependent rect. 22 16