Os09g0487100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0487100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.2 | 0.33 | 10 | -1.98 | 0.14 | -1.55 | -0.0781 | 0.182 | -0.0953 | 8.61 | 23.47 | 5988 | -- | -- |
| 49.13 | 0.326 | 10 | -1.98 | 0.139 | -1.63 | -0.0657 | -- | -0.088 | 8.52 | 23.09 | 5974 | -- | -- |
| 49.15 | 0.327 | 10 | -1.98 | 0.142 | -1.61 | -- | 0.00463 | -0.0806 | 8.29 | 23.1 | 5974 | -- | -- |
| 49.14 | 0.326 | 10 | -1.98 | 0.141 | -1.63 | -- | -- | -0.0868 | 8.25 | 23.06 | 5962 | -- | -- |
| 50.2 | 0.33 | 10 | -1.97 | -- | -1.66 | -- | -0.12 | -0.0792 | -- | 22.96 | 5877 | -- | -- |
| 79.66 | 0.418 | 9.95 | -1.13 | 0.143 | -- | -0.11 | -- | 0.289 | 8.25 | -- | -- | -- | -- |
| 79.67 | 0.418 | 9.95 | -1.13 | 0.146 | -- | -- | -- | 0.289 | 7.75 | -- | -- | -- | -- |
| 50.21 | 0.33 | 10 | -1.98 | -- | -1.63 | -- | -- | -0.0855 | -- | 23.05 | 5877 | -- | -- |
| 103.65 | 0.477 | 9.96 | -- | 0.21 | -0.773 | -- | -- | 0.27 | 4.39 | 25.9 | 1505 | -- | -- |
| 80.83 | 0.42 | 9.96 | -1.13 | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
| 113.46 | 0.498 | 9.93 | -- | 0.139 | -- | -- | -- | 0.415 | 8.32 | -- | -- | -- | -- |
| 105.64 | 0.48 | 9.96 | -- | -- | -0.674 | -- | -- | 0.294 | -- | 25.7 | 1504 | -- | -- |
| 114.54 | 0.5 | 9.93 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.93 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 4 | 47.01 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 6 | 47.05 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 7 | 47.05 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 40 | 47.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 48 | 47.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 62 | 47.49 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 65 | 47.51 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 70 | 47.53 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 73 | 47.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 102 | 47.68 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 168 | 48.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 171 | 48.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 226 | 48.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 230 | 48.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 238 | 48.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 272 | 48.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 275 | 48.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 281 | 48.74 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 292 | 48.76 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 302 | 48.78 | humidity | 50 | 43200 | > th | dose independent | sin | 3 | NA |
| 330 | 48.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 352 | 48.85 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 358 | 48.86 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 411 | 48.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 466 | 48.95 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 477 | 48.97 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 519 | 49.07 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 520 | 49.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 528 | 49.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 533 | 49.09 | humidity | 50 | 43200 | < th | dose independent | sin | 3 | NA |
| 557 | 49.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 585 | 49.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 586 | 49.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 587 | 49.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 648 | 49.23 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 672 | 49.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 673 | 49.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 674 | 49.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 678 | 49.25 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 817 | 49.34 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 818 | 49.34 | temperature | 20 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 913 | 49.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 914 | 49.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 921 | 49.43 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 923 | 49.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 940 | 49.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 943 | 49.44 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 3 |