Os09g0485900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).
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Os09g0485900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.72 | 0.351 | 14.1 | 0.562 | 0.654 | 0.405 | 0.322 | -1.11 | -0.0912 | 18.2 | 20.5 | 4261 | -- | -- |
| 56.51 | 0.35 | 14.1 | 0.6 | 0.646 | 0.678 | 0.305 | -- | -0.0834 | 18.1 | 20.2 | 11673 | -- | -- |
| 55.95 | 0.348 | 14.1 | 0.562 | 0.657 | 0.407 | -- | -1.11 | -0.0904 | 18.1 | 20.57 | 4243 | -- | -- |
| 56.8 | 0.351 | 14.1 | 0.574 | 0.639 | 0.677 | -- | -- | -0.0899 | 18.1 | 20.3 | 11655 | -- | -- |
| 78.04 | 0.411 | 14.1 | 0.529 | -- | 0.355 | -- | -1.25 | -0.11 | -- | 20.89 | 4623 | -- | -- |
| 64.01 | 0.375 | 14 | 1.12 | 0.639 | -- | 0.443 | -- | 0.127 | 18.3 | -- | -- | -- | -- |
| 64.46 | 0.376 | 14 | 1.12 | 0.642 | -- | -- | -- | 0.129 | 18.1 | -- | -- | -- | -- |
| 78.41 | 0.412 | 14.1 | 0.46 | -- | 0.744 | -- | -- | -0.126 | -- | 19.8 | 14800 | -- | -- |
| 58.93 | 0.358 | 14.1 | -- | 0.666 | 1.06 | -- | -- | -0.214 | 18 | 16.86 | 47520 | -- | -- |
| 85.83 | 0.433 | 14 | 1.1 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 97.4 | 0.462 | 14 | -- | 0.626 | -- | -- | -- | 0.00431 | 18.2 | -- | -- | -- | -- |
| 80.43 | 0.418 | 14.1 | -- | -- | 1.03 | -- | -- | -0.208 | -- | 16.78 | 47520 | -- | -- |
| 117.74 | 0.506 | 14 | -- | -- | -- | -- | -- | -0.0075 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 7 | 51.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 38 | 52.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 45 | 52.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 54 | 53.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 69 | 53.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 110 | 53.85 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 24 | 9 |
| 124 | 53.94 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 137 | 54.02 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 15 |
| 141 | 54.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 157 | 54.14 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 229 | 54.60 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 3 |
| 250 | 54.71 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 299 | 54.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 306 | 54.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 315 | 54.93 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 318 | 54.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 322 | 54.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 324 | 54.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 328 | 54.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 336 | 54.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 337 | 54.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 366 | 55.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 390 | 55.04 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 403 | 55.06 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 404 | 55.06 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 415 | 55.08 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 419 | 55.09 | temperature | 20 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 441 | 55.11 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 459 | 55.13 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 466 | 55.13 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 468 | 55.13 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 478 | 55.14 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 484 | 55.15 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 599 | 55.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 605 | 55.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 626 | 55.31 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 645 | 55.33 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 662 | 55.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 716 | 55.40 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 749 | 55.43 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 795 | 55.48 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 825 | 55.51 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 826 | 55.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 841 | 55.52 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 857 | 55.53 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 861 | 55.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 886 | 55.56 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 896 | 55.57 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 965 | 55.62 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 966 | 55.62 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 995 | 55.64 | temperature | 20 | 14400 | < th | dose independent | sin | 19 | NA |
| 998 | 55.64 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 8 |