Os09g0485500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T6J4.5 protein (WIP6 protein).
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Os09g0485500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T6J4.5 protein (WIP6 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.43 | 0.58 | 3.03 | -0.445 | 0.493 | -0.207 | -0.57 | 1.46 | 0.234 | 5.95 | 9.994 | 4430 | -- | -- |
| 155.14 | 0.58 | 3.04 | -0.433 | 0.481 | -0.292 | -0.38 | -- | 0.23 | 5.66 | 10 | 4512 | -- | -- |
| 153.22 | 0.577 | 3.03 | -0.449 | 0.491 | -0.21 | -- | 1.47 | 0.235 | 5.95 | 10 | 4444 | -- | -- |
| 155.84 | 0.581 | 3.04 | -0.432 | 0.481 | -0.293 | -- | -- | 0.23 | 5.67 | 9.98 | 4514 | -- | -- |
| 165.6 | 0.599 | 3.03 | -0.43 | -- | -0.202 | -- | 1.46 | 0.252 | -- | 9.98 | 4389 | -- | -- |
| 156.37 | 0.586 | 3.06 | -0.538 | 0.49 | -- | -0.558 | -- | 0.226 | 6.11 | -- | -- | -- | -- |
| 157.13 | 0.587 | 3.06 | -0.543 | 0.487 | -- | -- | -- | 0.229 | 6.18 | -- | -- | -- | -- |
| 167.71 | 0.603 | 3.07 | -0.388 | -- | -0.368 | -- | -- | 0.185 | -- | 9.42 | 5747 | -- | -- |
| 159.66 | 0.589 | 3.05 | -- | 0.472 | -0.466 | -- | -- | 0.213 | 5.79 | 10 | 8754 | -- | -- |
| 169.44 | 0.608 | 3.07 | -0.53 | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
| 164.92 | 0.601 | 3.05 | -- | 0.48 | -- | -- | -- | 0.289 | 6.23 | -- | -- | -- | -- |
| 171.13 | 0.609 | 3.08 | -- | -- | -0.509 | -- | -- | 0.205 | -- | 9.98 | 7203 | -- | -- |
| 176.85 | 0.621 | 3.06 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 4 | 137.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 8 | 137.53 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 18 | 137.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 19 | 137.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 39 | 137.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 42 | 137.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 49 | 137.88 | temperature | 25.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 50 | 138.20 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 55 | 138.82 | humidity | 90.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 58 | 139.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 59 | 139.09 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 60 | 139.16 | wind | 3.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 63 | 139.35 | wind | 1.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 64 | 139.36 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 67 | 139.40 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 69 | 139.46 | humidity | 80.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 74 | 139.59 | temperature | 10.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 75 | 139.59 | temperature | 30.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 76 | 139.59 | humidity | 50.0 | 30 | > th | dose independent | rect. | 24 | 1 |
| 80 | 139.59 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 1 |
| 85 | 139.59 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 1 |
| 86 | 139.59 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 87 | 139.59 | wind | 9.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 88 | 139.59 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 93 | 139.59 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 95 | 139.70 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 99 | 139.94 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 103 | 140.50 | wind | 9.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 106 | 141.04 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 109 | 141.55 | wind | 1.0 | 30 | > th | dose dependent | rect. | 24 | 1 |
| 117 | 143.10 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 24 | 1 |
| 120 | 143.73 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 126 | 144.68 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 129 | 144.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 130 | 145.01 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 141 | 145.32 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 144 | 145.41 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 3 |
| 180 | 146.41 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 192 | 147.12 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 194 | 147.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 197 | 147.26 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 198 | 147.34 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 200 | 147.39 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 204 | 147.41 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 209 | 147.45 | wind | 7.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 215 | 147.48 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 216 | 147.50 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 219 | 147.51 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 221 | 147.51 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 222 | 147.51 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 225 | 147.51 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 226 | 147.51 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 228 | 147.51 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 233 | 147.51 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 234 | 147.51 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 235 | 147.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 240 | 147.51 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 241 | 147.52 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 248 | 147.59 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 258 | 147.89 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 261 | 147.93 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 262 | 147.97 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 326 | 148.61 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 331 | 148.67 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 332 | 148.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 335 | 148.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 339 | 148.67 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 348 | 148.67 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 349 | 148.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 369 | 148.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 372 | 148.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 394 | 148.80 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 402 | 149.06 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 23 |
| 403 | 149.06 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 406 | 149.13 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 421 | 149.59 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 3 |
| 427 | 149.67 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 433 | 149.79 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 434 | 149.79 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 435 | 149.80 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 437 | 149.81 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 441 | 149.89 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 444 | 149.96 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 449 | 150.00 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 463 | 150.15 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 465 | 150.17 | humidity | 50.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 467 | 150.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 475 | 150.25 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 490 | 150.35 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 4 |
| 497 | 150.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 516 | 150.52 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 519 | 150.53 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 553 | 150.74 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 562 | 150.78 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 584 | 150.89 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 602 | 150.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 603 | 150.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 610 | 150.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 613 | 150.92 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 614 | 150.92 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 626 | 150.95 | humidity | 90.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 639 | 150.99 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 640 | 150.99 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 644 | 151.00 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 647 | 151.00 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 12 | 12 |
| 665 | 151.02 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 675 | 151.04 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 676 | 151.04 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 683 | 151.04 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 689 | 151.05 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 736 | 151.09 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 740 | 151.09 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 750 | 151.10 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 763 | 151.10 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 766 | 151.10 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 772 | 151.11 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 775 | 151.11 | temperature | 15.0 | 43200 | < th | dose dependent | no | NA | NA |
| 789 | 151.11 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 7 | 21 |
| 803 | 151.12 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 805 | 151.12 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 807 | 151.12 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 846 | 151.12 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 855 | 151.13 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 952 | 151.15 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 974 | 151.15 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 985 | 151.16 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 15 | 10 |