Os09g0483600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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Os09g0483600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.51 | 0.526 | 5.81 | 2.13 | 0.328 | -1.37 | 1.16 | 5.25 | 0.211 | 13.4 | 25 | 1097 | -- | -- |
| 133.73 | 0.539 | 5.96 | 0.923 | 0.378 | -0.831 | 0.715 | -- | -0.12 | 12.9 | 25.6 | 1100 | -- | -- |
| 129.8 | 0.531 | 5.81 | 2.15 | 0.367 | -1.35 | -- | 5.12 | 0.153 | 12.3 | 25.69 | 1148 | -- | -- |
| 135.68 | 0.543 | 5.95 | 0.954 | 0.391 | -0.827 | -- | -- | -0.119 | 12.2 | 25.7 | 1125 | -- | -- |
| 136.6 | 0.544 | 5.83 | 2.03 | -- | -1.47 | -- | 4.64 | 0.162 | -- | 25.1 | 1074 | -- | -- |
| 155.82 | 0.585 | 5.97 | 0.684 | 0.56 | -- | 0.864 | -- | -0.179 | 12.5 | -- | -- | -- | -- |
| 158.87 | 0.59 | 5.97 | 0.716 | 0.559 | -- | -- | -- | -0.176 | 12.1 | -- | -- | -- | -- |
| 143.38 | 0.558 | 5.95 | 0.991 | -- | -1.04 | -- | -- | -0.0825 | -- | 25 | 1049 | -- | -- |
| 158.11 | 0.586 | 5.99 | -- | 0.417 | -0.633 | -- | -- | -0.272 | 11.9 | 26.53 | 1125 | -- | -- |
| 178.54 | 0.624 | 5.98 | 0.698 | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
| 172.38 | 0.614 | 5.98 | -- | 0.549 | -- | -- | -- | -0.255 | 12.1 | -- | -- | -- | -- |
| 167.63 | 0.603 | 5.98 | -- | -- | -0.828 | -- | -- | -0.219 | -- | 25.3 | 1037 | -- | -- |
| 191.4 | 0.646 | 5.99 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 3 | 122.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 22 | 124.74 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 63 | 127.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 81 | 128.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 82 | 128.50 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 96 | 128.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 136 | 129.66 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 221 | 130.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 260 | 130.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 261 | 130.48 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 286 | 130.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 288 | 130.64 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 3 |
| 294 | 130.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 307 | 130.78 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 319 | 130.91 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 333 | 130.99 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 404 | 131.36 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 413 | 131.43 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 422 | 131.48 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 426 | 131.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 434 | 131.53 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 469 | 131.60 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 6 |
| 504 | 131.78 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 11 |
| 521 | 131.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 525 | 131.90 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 540 | 131.98 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 556 | 132.07 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 587 | 132.15 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 631 | 132.28 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 3 |
| 632 | 132.28 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 636 | 132.29 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 658 | 132.34 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 8 |
| 667 | 132.36 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 5 |
| 699 | 132.40 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 700 | 132.40 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 708 | 132.42 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 709 | 132.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 754 | 132.54 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 772 | 132.58 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 812 | 132.63 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 838 | 132.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 852 | 132.69 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 858 | 132.70 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 873 | 132.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 921 | 132.82 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 942 | 132.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 977 | 132.92 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 985 | 132.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 989 | 132.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |