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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0482600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.74 (0.0473) R2 : 0.743
β1 : 1.71 (0.179) R2dD : 0.0575 R2D : 0.0907
β2 : 2.45 (0.123) R2dC : 0.225 R2C : 0.227
β3 : 3.27 (0.139) R2dE : 0.338 R2E : 0.411
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.848 (0.102) R2dN8 : 0.0533 R2N8 : 0.0412
σ : 0.883
deviance : 359.24
__
_____
C
peak time of C : 6.8
E
wheather : temperature
threshold : 25.2
memory length : 2694
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
355.59 0.886 5.76 1.51 2.45 3.34 1.19 -0.629 0.783 6.81 25.04 2680 -- --
355.65 0.878 5.74 1.7 2.45 3.27 1.21 -- 0.834 6.81 25.14 2686 -- --
359.02 0.882 5.76 1.5 2.46 3.35 -- -0.782 0.803 6.8 25.21 2694 -- --
359.24 0.883 5.74 1.71 2.45 3.27 -- -- 0.848 6.8 25.2 2694 -- --
665.15 1.2 5.85 1.38 -- 3.44 -- -0.748 0.682 -- 24.08 2765 -- --
773.16 1.3 5.68 2.82 2.54 -- 1.74 -- 1.13 6.02 -- -- -- --
780.6 1.31 5.68 2.84 2.55 -- -- -- 1.12 6.05 -- -- -- --
663.69 1.2 5.83 1.65 -- 3.39 -- -- 0.71 -- 24 2770 -- --
431.18 0.967 5.78 -- 2.55 3.67 -- -- 0.611 6.74 25.02 2682 -- --
1117.37 1.56 5.72 2.91 -- -- -- -- 1.18 -- -- -- -- --
992.64 1.47 5.75 -- 2.59 -- -- -- 0.808 6 -- -- -- --
728.74 1.26 5.89 -- -- 3.77 -- -- 0.457 -- 23.8 2780 -- --
1340.73 1.71 5.8 -- -- -- -- -- 0.859 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 343.73 wind 7.0 43200 < th dose independent rect. 10 1
2 344.56 wind 7.0 43200 > th dose independent rect. 10 1
3 344.77 wind 5.0 43200 > th dose dependent rect. 10 2
8 349.39 temperature 25.0 14400 > th dose dependent rect. 21 9
9 349.48 temperature 25.0 14400 > th dose dependent rect. 22 1
10 349.74 temperature 25.0 14400 > th dose dependent rect. 19 11
11 350.02 wind 7.0 43200 < th dose independent rect. 5 7
12 350.46 wind 5.0 43200 > th dose dependent rect. 5 7
16 351.30 wind 7.0 43200 < th dose independent rect. 8 4
31 353.73 wind 7.0 43200 > th dose independent rect. 5 7
33 353.76 wind 7.0 43200 > th dose independent rect. 8 4
41 354.80 radiation 30.0 14400 > th dose independent rect. 15 17
57 355.93 temperature 25.0 14400 > th dose independent rect. 19 11
58 355.95 radiation 10.0 14400 < th dose dependent rect. 17 1
81 357.76 radiation 40.0 14400 < th dose dependent rect. 17 1
85 357.87 temperature 25.0 14400 > th dose dependent rect. 2 5
93 358.03 radiation 10.0 14400 < th dose dependent rect. 17 10
97 358.09 radiation 10.0 14400 < th dose dependent rect. 17 8
102 358.18 wind 3.0 43200 > th dose independent rect. 3 1
105 358.26 radiation 1.0 14400 > th dose dependent rect. 17 1
110 358.40 radiation 40.0 14400 < th dose dependent rect. 16 3
114 358.47 radiation 40.0 14400 < th dose dependent rect. 16 11
116 358.53 radiation 40.0 14400 < th dose dependent rect. 16 9
155 359.14 radiation 30.0 14400 > th dose independent rect. 15 2
176 359.25 temperature 25.0 14400 > th dose dependent rect. 19 1
186 359.46 wind 5.0 43200 > th dose dependent rect. 24 14
203 359.59 wind 3.0 43200 < th dose independent rect. 3 1
221 359.86 wind 1.0 43200 > th dose dependent rect. 3 1
223 359.89 temperature 25.0 14400 < th dose independent rect. 19 11
252 360.53 temperature 20.0 43200 > th dose independent rect. 19 1
255 360.76 wind 7.0 43200 < th dose independent rect. 24 13
262 360.88 wind 7.0 43200 < th dose dependent rect. 3 1
312 361.80 temperature 25.0 14400 > th dose dependent sin 12 NA
320 361.97 temperature 25.0 14400 < th dose independent rect. 5 1
326 362.00 radiation 30.0 14400 < th dose independent rect. 15 4
332 362.09 radiation 30.0 14400 < th dose independent rect. 15 12
333 362.13 wind 7.0 43200 > th dose independent rect. 24 13
334 362.15 radiation 30.0 14400 < th dose independent rect. 15 10
345 362.21 radiation 30.0 14400 < th dose independent rect. 15 1
360 362.43 temperature 25.0 14400 < th dose independent rect. 22 8
364 362.61 temperature 25.0 14400 > th dose independent rect. 5 1
388 363.75 temperature 25.0 14400 > th dose independent rect. 22 4
408 364.35 radiation 30.0 14400 > th dose dependent rect. 15 2
427 364.55 temperature 25.0 14400 > th dose independent sin 10 NA
439 364.85 temperature 25.0 14400 > th dose independent rect. 3 4
446 365.03 temperature 25.0 43200 < th dose dependent rect. 10 1
462 365.36 temperature 25.0 14400 < th dose independent rect. 23 2
485 365.98 temperature 25.0 14400 > th dose independent rect. 23 1
489 366.17 temperature 25.0 14400 < th dose independent rect. 22 4
493 366.32 radiation 30.0 14400 > th dose independent rect. 7 1
511 366.36 temperature 25.0 14400 < th dose independent sin 10 NA
514 366.38 temperature 25.0 720 > th dose dependent rect. 18 14
523 366.70 temperature 25.0 14400 > th dose independent rect. 1 7
527 366.88 wind 5.0 43200 < th dose independent rect. 5 2
531 366.93 radiation 10.0 14400 > th dose independent rect. 16 1
540 367.18 temperature 25.0 14400 < th dose independent rect. 1 7
560 367.65 precipitation 0.1 43200 > th dose dependent rect. 4 14
565 367.75 radiation 40.0 4320 > th dose dependent rect. 13 2
663 368.98 humidity 70.0 14400 < th dose independent rect. 19 1
691 369.41 wind 5.0 43200 > th dose independent rect. 5 2
700 369.57 temperature 20.0 43200 < th dose independent rect. 19 2
716 369.91 wind 5.0 43200 < th dose independent sin 5 NA
737 370.43 radiation 10.0 14400 < th dose independent rect. 16 1
748 370.69 humidity 90.0 43200 < th dose independent rect. 10 1
765 371.01 precipitation 0.1 43200 > th dose dependent rect. 4 17
773 371.12 wind 5.0 43200 > th dose independent sin 5 NA
790 371.52 humidity 80.0 14400 > th dose independent rect. 19 1
795 371.63 wind 7.0 43200 > th dose independent rect. 20 17
799 371.67 humidity 90.0 43200 > th dose independent rect. 9 2
800 371.68 wind 5.0 43200 > th dose dependent sin 6 NA
818 371.86 wind 7.0 43200 < th dose independent rect. 20 17
845 372.35 temperature 20.0 43200 > th dose independent rect. 12 10
846 372.36 temperature 25.0 43200 < th dose dependent rect. 9 9
856 372.58 temperature 25.0 14400 > th dose dependent rect. 5 1
867 372.73 temperature 25.0 1440 > th dose dependent sin 10 NA
961 374.44 radiation 10.0 14400 < th dose dependent sin 14 NA
973 374.61 temperature 25.0 43200 < th dose dependent rect. 17 1