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Os09g0482500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0409) R2 : 0.415
β1 : 0.355 (0.145) R2dD : 0.00917 R2D : -0.154
β2 : 5.11 (0.468) R2dC : 3.6 R2C : -4.13
β3 : 6.79 (0.573) R2dE : 4.24 R2E : -3.53
β4 : 11.3 (1.55) R2dD*C : 0.83 R2D*C : -1.16
β5 : 15.1 (1.92) R2dD*E : 0.986 R2D*E : -0.939
γ1 : -0.887 (0.0822) R2dN8 : 0.217 R2N8 : 0.162
σ : 0.698
deviance : 220.42
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C
peak time of C : 18.1
E
wheather : radiation
threshold : 0.9198
memory length : 731
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
220.42 0.698 12.9 0.355 5.11 6.79 11.3 15.1 -0.887 18.1 0.9198 731 -- --
237.89 0.718 12.7 0.465 1.23 1.8 1.75 -- -0.829 23.3 5.7 1153 -- --
277.7 0.782 12.7 0.227 0.467 0.0172 -- 1.1 -0.961 3.22 0.556 705 -- --
239.85 0.721 12.7 0.575 1.75 2.92 -- -- -0.687 22.5 2.737 1159 -- --
260.22 0.751 12.7 0.259 -- 0.515 -- 2.04 -0.943 -- 12.97 288 -- --
273.54 0.775 12.7 0.292 0.468 -- 1.86 -- -0.944 2.66 -- -- -- --
285.5 0.791 12.7 0.245 0.482 -- -- -- -0.955 3.12 -- -- -- --
255.72 0.745 12.6 0.603 -- 1.41 -- -- -0.947 -- 3.187 1611 -- --
247.37 0.733 12.7 -- 1.59 2.62 -- -- -0.766 22.5 3.034 1153 -- --
298.76 0.808 12.7 0.265 -- -- -- -- -0.943 -- -- -- -- --
287.08 0.793 12.7 -- 0.487 -- -- -- -0.983 3.12 -- -- -- --
254.06 0.742 12.7 -- -- 1.64 -- -- -0.782 -- 4.24 1603 -- --
300.62 0.809 12.7 -- -- -- -- -- -0.972 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 215.63 radiation 1.0 43200 < th dose dependent rect. 24 4
3 217.46 radiation 1.0 720 < th dose dependent sin 13 NA
5 218.72 radiation 1.0 720 < th dose dependent rect. 16 17
7 218.87 wind 3.0 43200 > th dose dependent rect. 20 1
10 218.99 wind 5.0 43200 > th dose independent rect. 20 1
14 219.12 wind 5.0 43200 < th dose independent rect. 20 1
15 219.35 radiation 1.0 720 < th dose dependent rect. 5 16
31 219.91 radiation 1.0 43200 < th dose dependent rect. 21 7
38 220.12 temperature 25.0 4320 > th dose independent rect. 7 1
41 220.32 precipitation 0.1 43200 > th dose dependent rect. 20 1
49 220.59 temperature 25.0 4320 < th dose independent rect. 7 1
56 220.77 radiation 1.0 720 < th dose dependent rect. 20 23
57 220.82 wind 9.0 43200 > th dose dependent rect. 14 17
61 220.89 radiation 1.0 720 > th dose independent rect. 17 14
67 221.05 radiation 1.0 720 < th dose dependent sin 23 NA
72 221.14 radiation 1.0 720 > th dose independent rect. 17 16
76 221.17 radiation 1.0 720 < th dose dependent rect. 5 18
80 221.19 radiation 1.0 1440 < th dose dependent rect. 17 7
81 221.20 radiation 1.0 1440 < th dose dependent rect. 14 10
88 221.28 radiation 1.0 720 < th dose dependent rect. 7 23
92 221.34 radiation 1.0 720 < th dose dependent no NA NA
93 221.34 wind 9.0 43200 > th dose dependent rect. 14 11
101 221.44 temperature 25.0 14400 < th dose independent rect. 18 4
109 221.49 temperature 25.0 14400 < th dose independent rect. 19 1
114 221.55 wind 7.0 43200 > th dose dependent sin 18 NA
119 221.60 radiation 1.0 1440 < th dose dependent rect. 17 1
125 221.64 wind 7.0 43200 > th dose dependent rect. 10 11
131 221.67 temperature 25.0 14400 > th dose independent rect. 18 4
143 221.76 wind 9.0 43200 > th dose independent rect. 14 17
148 221.80 wind 7.0 43200 > th dose independent rect. 5 17
174 221.93 wind 5.0 14400 > th dose independent rect. 19 19
178 221.94 wind 7.0 43200 > th dose independent rect. 11 20
189 221.98 wind 7.0 43200 < th dose independent rect. 5 17
191 221.98 temperature 25.0 14400 > th dose dependent rect. 17 1
200 222.02 wind 7.0 43200 > th dose dependent rect. 14 7
214 222.05 wind 7.0 43200 > th dose independent rect. 10 12
216 222.05 wind 7.0 43200 > th dose dependent rect. 17 4
228 222.09 temperature 25.0 4320 > th dose dependent rect. 17 18
231 222.11 wind 7.0 43200 > th dose independent rect. 8 14
244 222.15 wind 7.0 43200 < th dose independent rect. 10 12
246 222.16 radiation 1.0 720 < th dose independent sin 13 NA
249 222.17 radiation 1.0 720 < th dose independent rect. 17 14
263 222.19 wind 7.0 43200 < th dose independent rect. 11 20
267 222.20 wind 7.0 43200 > th dose dependent rect. 10 14
268 222.21 radiation 1.0 720 < th dose independent rect. 16 17
275 222.23 wind 7.0 43200 > th dose independent rect. 10 14
279 222.24 wind 7.0 43200 < th dose independent rect. 8 14
288 222.26 wind 9.0 43200 > th dose dependent rect. 17 13
290 222.27 wind 7.0 43200 > th dose independent sin 18 NA
330 222.36 wind 7.0 43200 < th dose independent rect. 10 14
339 222.37 wind 7.0 43200 > th dose dependent rect. 11 21
352 222.41 radiation 1.0 720 < th dose dependent rect. 3 23
406 222.54 temperature 25.0 4320 > th dose dependent rect. 17 8
411 222.56 wind 9.0 43200 > th dose independent rect. 14 14
415 222.56 wind 9.0 43200 < th dose independent rect. 14 17
419 222.58 wind 7.0 43200 < th dose independent sin 18 NA
433 222.60 temperature 25.0 4320 > th dose dependent rect. 14 19
438 222.61 wind 9.0 43200 < th dose dependent rect. 20 2
440 222.61 temperature 25.0 1440 > th dose dependent rect. 13 22
450 222.64 temperature 25.0 1440 > th dose independent rect. 17 4
456 222.65 temperature 30.0 14400 < th dose independent rect. 14 2
469 222.68 temperature 30.0 14400 > th dose independent rect. 15 1
482 222.70 temperature 25.0 1440 > th dose dependent rect. 17 22
496 222.73 wind 7.0 43200 < th dose independent rect. 17 1
501 222.74 temperature 25.0 4320 < th dose independent rect. 6 3
508 222.75 wind 7.0 43200 > th dose independent rect. 17 1
510 222.75 wind 7.0 43200 > th dose independent rect. 17 23
522 222.77 temperature 25.0 4320 > th dose dependent rect. 20 15
528 222.79 wind 5.0 14400 < th dose independent rect. 19 19
529 222.79 temperature 25.0 4320 > th dose dependent sin 13 NA
533 222.80 wind 7.0 43200 < th dose independent rect. 17 4
547 222.83 wind 7.0 43200 > th dose independent rect. 17 4
556 222.84 temperature 25.0 4320 > th dose dependent sin 9 NA
563 222.86 temperature 30.0 1440 < th dose independent rect. 11 5
591 222.90 wind 7.0 43200 < th dose independent rect. 17 23
605 222.92 temperature 25.0 1440 > th dose dependent rect. 23 22
625 222.96 temperature 25.0 1440 > th dose dependent rect. 7 22
633 222.98 radiation 1.0 720 > th dose independent sin 13 NA
644 222.99 temperature 25.0 4320 > th dose dependent rect. 14 12
660 223.00 temperature 25.0 1440 > th dose dependent rect. 10 23
700 223.05 wind 5.0 43200 > th dose dependent rect. 5 17
713 223.07 wind 9.0 43200 < th dose independent rect. 14 14
716 223.07 temperature 25.0 1440 > th dose dependent no NA NA
739 223.11 temperature 25.0 4320 > th dose independent rect. 18 16
746 223.11 temperature 25.0 1440 > th dose dependent rect. 20 23
750 223.12 temperature 20.0 4320 > th dose dependent rect. 24 1
814 223.22 wind 7.0 43200 > th dose independent no NA NA
858 223.29 wind 7.0 43200 > th dose independent rect. 20 23
874 223.32 atmosphere 1000.0 43200 < th dose independent rect. 11 2
876 223.32 wind 1.0 43200 < th dose dependent rect. 24 4
893 223.35 temperature 25.0 4320 < th dose independent rect. 18 16
896 223.36 wind 7.0 43200 < th dose independent no NA NA
919 223.39 temperature 25.0 1440 > th dose dependent rect. 7 14
960 223.44 wind 7.0 43200 < th dose independent rect. 20 23