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Os09g0482200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0384) R2 : 0.484
β1 : 0.119 (0.139) R2dD : 0.000992 R2D : -0.178
β2 : 3.95 (0.401) R2dC : 2.08 R2C : -2.76
β3 : 5.77 (0.501) R2dE : 2.85 R2E : -2.03
β4 : 9.32 (1.37) R2dD*C : 0.552 R2D*C : -0.806
β5 : 12.4 (1.74) R2dD*E : 0.614 R2D*E : -0.688
γ1 : -1.12 (0.0784) R2dN8 : 0.334 R2N8 : 0.257
σ : 0.666
deviance : 200.77
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_____
C
peak time of C : 18.3
E
wheather : radiation
threshold : 0.5905
memory length : 752
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.77 0.666 12 0.119 3.95 5.77 9.32 12.4 -1.12 18.3 0.5905 752 -- --
231.19 0.708 11.9 0.152 2.3 3.44 -0.44 -- -1.09 17.6 1.38 674 -- --
250.14 0.742 11.9 -0.0053 0.658 0.00934 -- 0.943 -1.18 4.41 0.5905 752 -- --
220.53 0.692 12 0.422 2.94 4.84 -- -- -0.986 18.6 0.811 789 -- --
242.98 0.726 11.9 0.021 -- 0.682 -- 1.21 -1.15 -- 3.672 463 -- --
250.28 0.742 11.9 0.0254 0.637 -- 1.46 -- -1.17 3.73 -- -- -- --
255.94 0.749 11.9 0.00391 0.664 -- -- -- -1.18 4.36 -- -- -- --
249.3 0.735 11.9 0.052 -- 0.68 -- -- -1.11 -- 0.7165 566 -- --
223.06 0.696 12 -- 2.7 4.38 -- -- -1.08 18.6 0.82 780 -- --
279.62 0.781 11.9 0.0301 -- -- -- -- -1.16 -- -- -- -- --
255.94 0.748 11.9 -- 0.664 -- -- -- -1.18 4.36 -- -- -- --
247.62 0.733 11.9 -- -- 0.96 -- -- -1.07 -- 3.67 721 -- --
279.65 0.781 11.9 -- -- -- -- -- -1.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.31 radiation 1.0 720 < th dose dependent sin 13 NA
3 204.99 radiation 1.0 720 < th dose dependent rect. 16 17
27 205.91 radiation 1.0 720 < th dose dependent rect. 4 23
40 206.19 radiation 1.0 720 < th dose dependent no NA NA
45 206.32 radiation 1.0 720 < th dose dependent sin 23 NA
49 206.45 radiation 1.0 720 < th dose dependent rect. 7 23
50 206.49 radiation 1.0 720 < th dose dependent rect. 20 23
58 207.22 radiation 1.0 720 < th dose dependent rect. 5 16
62 207.56 radiation 1.0 720 < th dose dependent rect. 5 14
63 207.56 precipitation 0.1 720 > th dose dependent rect. 20 23
66 207.81 radiation 1.0 720 < th dose independent rect. 16 16
68 207.86 precipitation 0.1 720 < th dose independent rect. 20 23
69 207.86 precipitation 0.1 720 < th dose dependent rect. 20 23
72 207.98 radiation 1.0 720 > th dose independent sin 13 NA
84 208.38 radiation 1.0 43200 < th dose dependent rect. 24 4
89 208.69 radiation 1.0 720 < th dose dependent rect. 5 18
91 208.75 radiation 1.0 720 < th dose dependent rect. 1 23
94 208.88 radiation 1.0 720 > th dose independent rect. 17 16
96 208.91 radiation 1.0 720 < th dose independent sin 13 NA
110 209.25 wind 5.0 14400 > th dose independent rect. 19 19
115 209.36 precipitation 0.1 720 > th dose independent rect. 21 21
126 209.72 wind 5.0 14400 < th dose independent rect. 20 18
141 210.25 radiation 1.0 720 < th dose independent rect. 5 16
142 210.27 precipitation 0.1 720 > th dose independent rect. 20 23
151 210.43 radiation 10.0 720 < th dose dependent rect. 16 7
161 210.59 precipitation 0.1 1440 < th dose independent rect. 11 7
162 210.59 precipitation 0.1 1440 < th dose dependent rect. 11 7
176 210.75 radiation 1.0 43200 < th dose dependent rect. 21 7
177 210.78 radiation 1.0 720 > th dose independent rect. 16 23
180 210.82 wind 7.0 43200 > th dose dependent rect. 10 11
182 210.84 precipitation 0.1 1440 > th dose independent rect. 7 11
190 210.98 precipitation 0.1 1440 > th dose independent rect. 12 6
196 211.01 precipitation 0.1 720 > th dose independent rect. 17 12
204 211.09 precipitation 0.1 720 < th dose independent rect. 15 18
205 211.09 precipitation 0.1 720 < th dose dependent rect. 15 18
231 211.47 radiation 1.0 720 < th dose independent no NA NA
232 211.48 wind 7.0 43200 > th dose independent rect. 10 12
236 211.53 precipitation 0.1 720 > th dose independent rect. 15 14
237 211.55 radiation 1.0 1440 < th dose dependent rect. 13 11
238 211.57 wind 7.0 43200 > th dose dependent sin 18 NA
244 211.60 wind 7.0 43200 < th dose independent rect. 10 12
263 211.68 wind 7.0 43200 > th dose dependent rect. 14 7
270 211.71 wind 7.0 43200 > th dose independent rect. 4 17
306 211.82 wind 3.0 43200 > th dose independent rect. 21 1
320 211.85 wind 7.0 43200 < th dose independent rect. 4 17
343 211.92 precipitation 0.1 14400 > th dose independent rect. 19 3
355 211.93 wind 7.0 43200 > th dose dependent rect. 11 20
367 211.96 wind 7.0 43200 > th dose dependent rect. 10 8
406 212.04 wind 7.0 43200 > th dose independent sin 21 NA
407 212.04 precipitation 0.1 720 < th dose independent rect. 13 22
410 212.04 precipitation 0.1 720 < th dose dependent rect. 13 22
416 212.08 wind 7.0 43200 < th dose independent rect. 17 1
418 212.08 wind 7.0 43200 > th dose independent rect. 11 20
426 212.11 wind 7.0 43200 < th dose independent rect. 24 21
446 212.17 wind 5.0 43200 < th dose independent rect. 19 2
459 212.22 precipitation 0.1 14400 < th dose independent rect. 19 3
461 212.22 precipitation 0.1 14400 < th dose dependent rect. 19 3
469 212.24 wind 7.0 43200 < th dose independent sin 21 NA
470 212.24 wind 5.0 43200 > th dose independent rect. 19 2
472 212.24 wind 5.0 43200 < th dose dependent rect. 21 1
474 212.25 wind 7.0 43200 < th dose independent rect. 11 20
480 212.27 precipitation 0.1 720 < th dose independent rect. 13 15
485 212.27 precipitation 0.1 720 < th dose dependent rect. 13 15
487 212.27 wind 9.0 43200 > th dose dependent rect. 14 16
489 212.28 radiation 1.0 720 > th dose independent no NA NA
490 212.28 radiation 1.0 720 > th dose independent rect. 5 14
556 212.31 radiation 1.0 720 < th dose independent rect. 1 23
579 212.36 wind 3.0 43200 > th dose dependent rect. 20 2
606 212.44 precipitation 0.1 14400 > th dose independent rect. 17 6
613 212.45 wind 9.0 43200 > th dose independent rect. 14 17
627 212.48 wind 5.0 14400 > th dose dependent rect. 19 19
646 212.54 precipitation 0.1 14400 < th dose independent rect. 17 6
650 212.54 precipitation 0.1 14400 < th dose dependent rect. 17 6
652 212.55 radiation 1.0 720 < th dose independent rect. 4 23
653 212.55 wind 1.0 43200 < th dose dependent rect. 23 5
672 212.60 wind 7.0 43200 > th dose independent rect. 17 1
688 212.62 wind 9.0 43200 > th dose independent rect. 14 13
732 212.70 radiation 1.0 720 < th dose independent rect. 7 23
760 212.76 wind 5.0 14400 > th dose independent sin 6 NA
763 212.76 precipitation 0.1 1440 > th dose dependent rect. 4 14
781 212.80 wind 9.0 43200 > th dose independent rect. 14 11
823 212.88 wind 7.0 43200 < th dose independent rect. 10 8
842 212.90 wind 7.0 43200 > th dose dependent rect. 14 2
856 212.92 wind 7.0 43200 > th dose independent rect. 17 23
881 212.98 wind 7.0 43200 > th dose independent rect. 20 23
883 212.99 wind 7.0 43200 > th dose independent no NA NA
885 213.00 wind 7.0 43200 > th dose independent rect. 11 5
887 213.00 wind 7.0 43200 < th dose independent rect. 10 6
891 213.00 humidity 50.0 720 > th dose dependent rect. 17 5
903 213.02 wind 7.0 43200 > th dose independent rect. 13 23
904 213.02 wind 7.0 43200 < th dose independent rect. 17 23
917 213.05 wind 9.0 43200 < th dose independent rect. 14 17
923 213.06 wind 7.0 43200 < th dose independent no NA NA
930 213.07 wind 9.0 43200 < th dose independent rect. 14 14
934 213.07 wind 7.0 43200 < th dose independent rect. 13 23
935 213.07 wind 7.0 43200 < th dose independent rect. 20 23
984 213.17 radiation 1.0 720 > th dose independent rect. 13 22
991 213.20 wind 5.0 14400 < th dose independent sin 6 NA