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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0480200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0577) R2 : 0.534
β1 : -1.31 (0.166) R2dD : 0.0865 R2D : 0.0173
β2 : 0.462 (0.0943) R2dC : 0.0247 R2C : -0.172
β3 : 11.2 (0.865) R2dE : 2.35 R2E : -1.53
β4 : -3.42 (0.36) R2dD*C : 0.0936 R2D*C : -0.0847
β5 : 34.1 (2.8) R2dD*E : 2.18 R2D*E : -2.49
γ1 : -0.108 (0.0884) R2dN8 : 0.00223 R2N8 : -0.183
σ : 0.749
deviance : 254.08
__
_____
C
peak time of C : 12.3
E
wheather : humidity
threshold : 90.83
memory length : 4869
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 0.917

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.08 0.749 4.68 -1.31 0.462 11.2 -3.42 34.1 -0.108 12.3 90.83 4869 12.1 0.917
340.5 0.859 4.21 -2.21 0.46 -1.15 -3.22 -- 0.0372 12.2 90.21 501 11.2 5.33
302.82 0.81 4.68 -1.42 0.464 11.3 -- 34.3 -0.115 11.5 90.79 4990 12.1 0.867
367.36 0.893 4.18 -2.3 0.545 -2.15 -- -- -0.0272 11.3 91.97 479 10.5 6.37
312.97 0.824 4.75 -1.42 -- 11.4 -- 34.3 -0.147 -- 90.69 5328 12.1 0.85
346.28 0.872 4.19 -2.12 0.459 -- -3.25 -- -0.0126 11.8 -- -- -- --
391.66 0.927 4.19 -2.26 0.483 -- -- -- -0.0288 11.1 -- -- -- --
378.01 0.906 4.21 -2.52 -- -1.92 -- -- -0.0784 -- 91 481 10.7 6.22
519.23 1.06 4.14 -- 0.528 -1.08 -- -- 0.18 11.5 89.97 211 10.3 6.78
406.17 0.942 4.21 -2.27 -- -- -- -- -0.0326 -- -- -- -- --
525.84 1.07 4.14 -- 0.504 -- -- -- 0.222 11.4 -- -- -- --
510.58 1.05 4.17 -- -- -1.15 -- -- 0.179 -- 89 2458 10.9 7.4
541.79 1.09 4.15 -- -- -- -- -- 0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.47 wind 9 14400 > th dose independent rect. 23 2
2 256.43 wind 9 14400 > th dose dependent rect. 23 2
5 261.22 atmosphere 1015 43200 > th dose independent rect. 19 1
6 262.01 radiation 1 14400 > th dose independent rect. 11 1
7 262.46 humidity 90 4320 > th dose dependent rect. 12 1
8 262.64 radiation 1 14400 < th dose independent rect. 11 1
9 262.64 radiation 1 14400 < th dose dependent rect. 11 1
10 264.36 atmosphere 1015 43200 > th dose dependent rect. 17 1
45 269.42 humidity 90 4320 > th dose independent rect. 12 1
48 269.99 atmosphere 1015 43200 < th dose independent rect. 18 1
49 270.17 atmosphere 1015 43200 < th dose independent rect. 16 3
59 270.57 temperature 20 4320 < th dose dependent rect. 17 2
60 270.61 atmosphere 1015 43200 > th dose independent rect. 15 1
72 271.01 radiation 40 14400 < th dose independent rect. 6 2
75 271.42 radiation 1 14400 < th dose dependent rect. 7 9
81 272.87 temperature 20 4320 > th dose independent rect. 13 5
88 273.37 radiation 40 14400 < th dose independent rect. 20 12
89 273.41 radiation 1 4320 < th dose independent rect. 8 1
90 273.41 radiation 1 4320 < th dose dependent rect. 8 1
91 273.64 radiation 40 14400 < th dose independent rect. 22 10
93 273.91 radiation 40 14400 < th dose independent rect. 17 15
98 274.19 wind 9 14400 < th dose independent rect. 23 1
101 274.30 humidity 60 1440 > th dose dependent rect. 11 1
103 274.45 radiation 1 4320 > th dose independent rect. 8 1
108 275.07 radiation 1 14400 < th dose independent rect. 9 6
110 275.17 temperature 20 4320 < th dose independent rect. 13 4
112 275.23 radiation 1 14400 > th dose independent rect. 9 6
118 275.45 temperature 20 1440 > th dose independent rect. 9 3
120 275.48 radiation 1 14400 < th dose dependent rect. 9 6
126 275.78 radiation 40 14400 < th dose independent rect. 2 6
140 276.49 humidity 80 1440 > th dose independent rect. 9 3
143 276.58 humidity 60 1440 > th dose dependent rect. 5 8
153 277.14 temperature 20 1440 < th dose independent rect. 9 1
159 277.26 radiation 1 14400 > th dose independent rect. 14 1
162 277.39 radiation 1 14400 < th dose independent rect. 14 1
163 277.39 radiation 1 14400 < th dose dependent rect. 14 1
176 278.05 temperature 15 43200 < th dose independent rect. 21 1
183 278.27 humidity 90 1440 < th dose dependent rect. 23 14
186 278.40 temperature 15 43200 < th dose dependent rect. 22 1
187 278.44 humidity 60 43200 < th dose independent rect. 18 13
195 278.71 temperature 15 4320 > th dose independent rect. 11 2
202 278.80 humidity 60 43200 < th dose dependent rect. 19 1
205 278.84 temperature 15 43200 > th dose independent rect. 21 1
210 278.88 humidity 60 43200 > th dose independent rect. 19 12
214 278.98 humidity 80 43200 > th dose independent rect. 22 20
220 279.09 temperature 15 43200 < th dose independent rect. 19 6
226 279.16 humidity 60 43200 > th dose independent rect. 19 10
239 279.33 temperature 15 43200 > th dose independent rect. 18 7
254 279.38 humidity 80 43200 > th dose independent rect. 21 22
257 279.43 humidity 60 43200 < th dose dependent rect. 18 14
281 279.62 humidity 90 1440 < th dose dependent rect. 11 1
301 279.73 radiation 20 14400 > th dose dependent rect. 6 1
322 279.79 temperature 15 43200 < th dose independent rect. 24 1
325 279.79 humidity 60 43200 < th dose dependent rect. 18 12
332 279.84 temperature 15 43200 < th dose dependent rect. 13 14
336 279.86 humidity 70 43200 < th dose independent rect. 22 9
356 279.97 humidity 70 43200 > th dose independent rect. 22 9
377 280.05 humidity 50 1440 > th dose dependent sin 4 NA
383 280.08 temperature 15 43200 > th dose independent rect. 13 14
393 280.10 temperature 15 43200 > th dose independent rect. 10 17
399 280.12 humidity 80 1440 < th dose independent rect. 9 3
419 280.22 temperature 15 43200 > th dose independent rect. 10 5
428 280.25 temperature 15 43200 < th dose dependent sin 15 NA
435 280.28 temperature 15 43200 < th dose independent rect. 13 13
452 280.34 temperature 15 43200 < th dose independent rect. 10 16
472 280.40 humidity 80 43200 > th dose independent rect. 10 20
519 280.56 humidity 60 43200 > th dose independent rect. 20 1
528 280.59 temperature 15 43200 > th dose independent rect. 1 1
532 280.60 humidity 60 43200 < th dose independent rect. 19 3
536 280.60 temperature 15 43200 < th dose dependent rect. 22 18
538 280.61 humidity 80 43200 < th dose independent rect. 22 20
539 280.61 temperature 15 43200 < th dose dependent rect. 21 11
546 280.63 temperature 15 43200 > th dose independent sin 16 NA
620 280.74 temperature 15 43200 < th dose dependent rect. 1 1
657 280.81 temperature 15 43200 < th dose independent sin 15 NA
757 280.96 humidity 60 43200 < th dose independent rect. 20 1
761 280.96 temperature 15 43200 < th dose dependent no NA NA
806 281.08 temperature 15 43200 < th dose independent rect. 10 4
812 281.09 humidity 50 43200 < th dose independent rect. 3 7
828 281.12 temperature 15 43200 > th dose independent rect. 13 1
833 281.14 humidity 90 1440 < th dose dependent sin 5 NA
854 281.21 humidity 90 1440 < th dose dependent rect. 5 8
857 281.21 temperature 15 43200 < th dose dependent rect. 1 23
877 281.26 temperature 15 43200 < th dose independent rect. 10 1
887 281.28 humidity 50 43200 > th dose independent rect. 17 17
891 281.29 wind 9 14400 < th dose independent rect. 22 3
909 281.34 temperature 15 43200 > th dose independent rect. 10 1
927 281.38 temperature 15 4320 < th dose dependent rect. 9 15
938 281.43 temperature 15 43200 < th dose independent rect. 13 1
956 281.48 temperature 15 43200 < th dose independent rect. 17 14
978 281.55 humidity 50 43200 < th dose independent sin 11 NA
993 281.59 temperature 15 43200 < th dose independent rect. 10 21
998 281.60 temperature 15 4320 < th dose dependent rect. 10 3