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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0480100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.02 (0.0329) R2 : 0.775
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.81 (0.0969) R2dE : 0.777 R2E : 0.757
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.368 (0.0696) R2dN8 : 0.0186 R2N8 : -0.00222
σ : 0.619
deviance : 176.41
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -16.67
memory length : 568
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.75
open length of G : 18.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.23 0.608 6.1 0.365 4.12 2.43 0.26 -0.212 -0.337 23.9 9.87 242 0.117 18.3
167.06 0.602 6.09 0.414 4.09 2.36 0.303 -- -0.318 23.9 9.907 223 0.3 18.3
167.13 0.602 6.11 0.354 4.14 2.42 -- -0.481 -0.324 23.9 9.505 225 0.267 18.3
167.34 0.602 6.1 0.391 4.13 2.34 -- -- -0.321 23.9 8.708 217 0.39 18.3
501.68 1.04 6.26 -0.869 -- 3.18 -- -1.01 -0.882 -- 6.899 968 2.13 21.9
256.44 0.751 6.02 0.766 2.84 -- 0.105 -- -0.0928 23.5 -- -- -- --
256.49 0.75 6.02 0.762 2.84 -- -- -- -0.0932 23.5 -- -- -- --
176.28 0.618 6.03 0.4 -- 3.9 -- -- -0.217 -- -13.6 576 9.77 18.4
171.35 0.61 6.11 -- 4.12 2.38 -- -- -0.351 23.9 9.177 207 0.55 18.2
764.32 1.29 5.96 0.84 -- -- -- -- -0.0617 -- -- -- -- --
271.79 0.771 6.04 -- 2.85 -- -- -- -0.178 23.6 -- -- -- --
176.41 0.619 6.02 -- -- 3.81 -- -- -0.368 -- -16.67 568 9.75 18.7
782.92 1.31 5.98 -- -- -- -- -- -0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.04 temperature 10.0 270 > th dose dependent rect. 24 18
2 169.83 temperature 10.0 270 > th dose dependent rect. 23 20
6 172.19 temperature 10.0 90 > th dose dependent rect. 2 17
11 173.79 temperature 10.0 90 > th dose dependent rect. 14 15
12 174.01 temperature 20.0 270 > th dose independent rect. 24 17
14 174.72 temperature 10.0 10 > th dose dependent rect. 3 17
15 174.72 radiation 1.0 270 < th dose dependent rect. 5 19
20 175.82 radiation 1.0 270 < th dose independent rect. 5 19
24 176.81 temperature 30.0 90 < th dose dependent rect. 5 22
32 177.49 temperature 15.0 270 > th dose dependent rect. 24 5
37 178.46 temperature 20.0 90 > th dose independent rect. 2 17
39 178.64 temperature 10.0 270 > th dose dependent rect. 12 16
48 179.34 radiation 1.0 270 < th dose independent rect. 4 21
49 179.52 temperature 20.0 270 > th dose independent rect. 24 5
51 179.71 temperature 10.0 270 > th dose dependent rect. 11 18
70 180.93 radiation 1.0 270 < th dose independent rect. 8 16
90 182.33 temperature 30.0 270 < th dose independent rect. 17 7
97 182.86 temperature 30.0 10 < th dose dependent rect. 6 21
101 183.08 radiation 20.0 270 < th dose dependent rect. 16 8
105 183.22 temperature 20.0 90 > th dose independent rect. 3 2
121 183.75 humidity 60.0 270 > th dose independent rect. 17 7
125 183.84 temperature 10.0 90 > th dose dependent rect. 3 2
151 185.04 humidity 80.0 90 > th dose independent rect. 3 2
158 185.15 radiation 10.0 270 < th dose independent rect. 16 8
162 185.20 temperature 20.0 720 > th dose dependent rect. 16 17
164 185.26 humidity 60.0 90 > th dose dependent rect. 3 2
174 185.49 radiation 40.0 90 < th dose independent rect. 14 15
182 185.67 temperature 30.0 270 < th dose independent rect. 4 20
191 185.84 radiation 1.0 90 < th dose dependent rect. 3 2
202 186.10 humidity 50.0 270 > th dose independent rect. 4 9
209 186.15 radiation 1.0 90 < th dose independent rect. 3 2
213 186.18 atmosphere 1015.0 90 < th dose dependent rect. 3 2
217 186.23 wind 9.0 90 < th dose independent rect. 3 2
218 186.23 temperature 10.0 90 > th dose independent rect. 3 2
220 186.23 temperature 30.0 90 < th dose independent rect. 3 2
221 186.23 humidity 50.0 90 > th dose independent rect. 3 2
224 186.23 atmosphere 995.0 90 > th dose independent rect. 3 2
225 186.23 atmosphere 1010.0 90 < th dose independent rect. 3 2
230 186.23 temperature 10.0 90 > th dose independent rect. 5 22
231 186.24 wind 9.0 270 < th dose dependent rect. 24 4
233 186.31 precipitation 0.1 90 < th dose independent rect. 5 9
234 186.31 humidity 50.0 270 > th dose independent rect. 4 20
235 186.31 precipitation 0.1 90 < th dose dependent rect. 5 9
251 186.68 wind 9.0 90 < th dose dependent rect. 3 2
270 187.04 precipitation 0.1 90 < th dose independent rect. 3 2
272 187.04 precipitation 0.1 90 < th dose dependent rect. 3 2
278 187.18 temperature 10.0 90 > th dose independent rect. 5 9
279 187.18 atmosphere 995.0 90 > th dose independent rect. 5 9
280 187.18 atmosphere 1015.0 90 < th dose independent rect. 5 9
281 187.18 temperature 10.0 90 > th dose independent rect. 14 15
283 187.24 humidity 80.0 270 > th dose independent rect. 24 5
287 187.36 atmosphere 995.0 270 > th dose independent rect. 17 7
292 187.53 atmosphere 995.0 90 > th dose independent rect. 5 22
297 187.64 humidity 50.0 270 > th dose dependent rect. 24 4
338 188.02 wind 3.0 270 < th dose independent rect. 24 4
343 188.13 wind 9.0 90 < th dose independent rect. 5 22
344 188.14 atmosphere 1015.0 270 < th dose independent rect. 24 17
345 188.15 wind 9.0 270 < th dose independent rect. 24 17
346 188.16 temperature 10.0 270 > th dose independent rect. 17 7
357 188.27 wind 9.0 90 < th dose independent rect. 14 15
360 188.33 wind 9.0 270 < th dose independent rect. 17 7
373 188.66 humidity 50.0 90 > th dose independent rect. 5 22
375 188.67 temperature 10.0 720 > th dose dependent rect. 16 19
376 188.71 temperature 10.0 270 > th dose dependent rect. 10 23
389 188.92 precipitation 0.1 90 < th dose independent rect. 5 22
390 188.92 precipitation 0.1 90 < th dose dependent rect. 5 22
397 189.05 wind 9.0 270 < th dose independent rect. 4 9
411 189.30 temperature 10.0 720 > th dose dependent rect. 16 17
427 189.60 precipitation 0.1 270 < th dose independent rect. 24 17
428 189.60 precipitation 0.1 270 < th dose dependent rect. 24 17
438 189.72 temperature 20.0 720 > th dose dependent rect. 16 13
456 189.90 temperature 20.0 10 > th dose independent rect. 3 3
462 189.98 precipitation 0.1 270 < th dose independent rect. 13 15
465 189.98 precipitation 0.1 270 < th dose dependent rect. 13 15
481 190.15 atmosphere 1015.0 270 < th dose independent rect. 24 4
484 190.17 temperature 10.0 270 > th dose independent rect. 24 4
486 190.17 temperature 30.0 270 < th dose independent rect. 24 4
487 190.17 humidity 50.0 270 > th dose independent rect. 24 4
490 190.17 atmosphere 995.0 270 > th dose independent rect. 24 4
491 190.17 radiation 1.0 270 < th dose independent rect. 24 4
496 190.17 temperature 10.0 270 > th dose independent rect. 4 20
497 190.17 radiation 1.0 270 < th dose dependent rect. 24 4
539 190.38 humidity 50.0 270 > th dose dependent rect. 17 7
589 190.70 precipitation 0.1 270 < th dose independent rect. 17 7
590 190.70 precipitation 0.1 270 < th dose dependent rect. 17 7
593 190.73 precipitation 0.1 270 < th dose independent rect. 24 4
595 190.73 precipitation 0.1 270 < th dose dependent rect. 24 4
604 190.79 humidity 50.0 270 > th dose dependent rect. 5 19
607 190.80 temperature 10.0 720 > th dose dependent rect. 7 22
616 190.94 temperature 20.0 1440 > th dose dependent rect. 11 18
641 191.16 temperature 20.0 1440 > th dose dependent rect. 11 21
642 191.17 temperature 20.0 1440 > th dose dependent sin 16 NA
646 191.18 temperature 20.0 1440 > th dose dependent rect. 16 1
660 191.25 temperature 10.0 720 > th dose dependent rect. 16 13
667 191.29 temperature 10.0 1440 > th dose dependent rect. 16 1
668 191.29 temperature 20.0 1440 > th dose dependent rect. 15 8
675 191.31 temperature 20.0 720 > th dose dependent sin 13 NA
689 191.35 wind 9.0 270 < th dose independent rect. 4 20
719 191.45 radiation 10.0 10 < th dose dependent rect. 3 3
749 191.57 temperature 20.0 1440 > th dose dependent rect. 24 23
758 191.62 temperature 20.0 1440 > th dose dependent no NA NA
767 191.64 temperature 20.0 1440 > th dose dependent rect. 20 23
794 191.71 temperature 20.0 1440 > th dose dependent rect. 18 23
795 191.72 wind 9.0 90 < th dose independent rect. 2 17
829 191.84 temperature 10.0 1440 > th dose dependent rect. 16 3
830 191.85 temperature 20.0 1440 > th dose dependent rect. 16 3
867 191.99 temperature 10.0 90 > th dose independent rect. 19 7
878 191.99 atmosphere 1015.0 90 < th dose independent rect. 2 17
879 191.99 radiation 20.0 90 < th dose dependent rect. 19 7
897 192.08 wind 9.0 90 < th dose independent rect. 19 7