Os09g0479600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0479600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.05 | 0.689 | 3.37 | -0.826 | 0.276 | 2.36 | -0.0486 | 8.22 | 0.0362 | 22.8 | 3.012 | 80 | 2.02 | 0.916 |
| 225.18 | 0.699 | 3.37 | -0.785 | 0.28 | 2.64 | -0.00269 | -- | 0.0562 | 22.6 | 3 | 92 | 2.02 | 0.833 |
| 215.06 | 0.683 | 3.37 | -0.824 | 0.276 | 2.36 | -- | 8.21 | 0.0362 | 22.8 | 3.012 | 80 | 2.02 | 0.916 |
| 223.87 | 0.697 | 3.37 | -0.816 | 0.266 | 2.48 | -- | -- | 0.0497 | 22.5 | 2.962 | 75 | 2.02 | 0.832 |
| 219.77 | 0.69 | 3.36 | -0.818 | -- | 2.42 | -- | 8.17 | 0.0401 | -- | 3.006 | 80 | 2.02 | 0.912 |
| 242.87 | 0.731 | 3.37 | -0.778 | 0.3 | -- | 0.206 | -- | 0.0208 | 0.0923 | -- | -- | -- | -- |
| 243.03 | 0.73 | 3.37 | -0.786 | 0.3 | -- | -- | -- | 0.0204 | 23.8 | -- | -- | -- | -- |
| 228.3 | 0.704 | 3.36 | -0.805 | -- | 2.5 | -- | -- | 0.0505 | -- | 2.937 | 75 | 2.01 | 0.832 |
| 240.82 | 0.723 | 3.37 | -- | 0.242 | 2.71 | -- | -- | 0.0591 | 22.5 | 2.963 | 73 | 2.02 | 0.817 |
| 248.7 | 0.737 | 3.37 | -0.777 | -- | -- | -- | -- | 0.0242 | -- | -- | -- | -- | -- |
| 259.29 | 0.753 | 3.36 | -- | 0.291 | -- | -- | -- | 0.108 | 23.6 | -- | -- | -- | -- |
| 244.65 | 0.728 | 3.34 | -- | -- | 2.66 | -- | -- | 0.14 | -- | 2.909 | 73 | 2.01 | 0.85 |
| 264.61 | 0.759 | 3.35 | -- | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.00 | wind | 3 | 90 | > th | dose independent | rect. | 2 | 1 |
| 2 | 220.53 | wind | 3 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 6 | 224.69 | wind | 5 | 90 | > th | dose independent | rect. | 2 | 4 |
| 7 | 224.95 | wind | 5 | 270 | > th | dose independent | rect. | 24 | 6 |
| 9 | 225.09 | wind | 5 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 29 | 226.37 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 36 | 226.70 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 80 | 227.49 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 86 | 227.56 | temperature | 25 | 43200 | > th | dose dependent | rect. | 2 | 3 |
| 90 | 227.57 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 95 | 227.60 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 97 | 227.61 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 101 | 227.63 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 102 | 227.64 | temperature | 25 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 104 | 227.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 105 | 227.65 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 122 | 227.67 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 135 | 227.73 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 149 | 227.74 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 166 | 227.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 171 | 227.78 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 180 | 227.82 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 188 | 227.83 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 189 | 227.84 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 206 | 227.85 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 213 | 227.87 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 275 | 228.09 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 420 | 228.53 | temperature | 30 | 43200 | > th | dose dependent | sin | 10 | NA |
| 483 | 228.70 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 574 | 228.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 576 | 229.02 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 579 | 229.03 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 627 | 229.12 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 653 | 229.26 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 737 | 229.48 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 745 | 229.48 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 876 | 229.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 2 | 3 |
| 906 | 229.55 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 948 | 229.60 | humidity | 70 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 959 | 229.61 | wind | 5 | 14400 | < th | dose independent | rect. | 23 | 1 |