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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0479500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0376) R2 : 0.126
β1 : 1.04 (0.138) R2dD : 0.113 R2D : 0.0769
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.35 (0.0802) R2dN8 : 0.049 R2N8 : 0.013
σ : 0.705
deviance : 227.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.62 0.66 5.02 1.17 0.49 -0.276 -0.716 3.14 0.42 19.7 54.51 7267 -- --
211.5 0.683 5.03 1.02 0.486 0.361 -0.802 -- 0.335 19.1 54.51 7267 -- --
198.22 0.656 5.03 1.16 0.492 -0.33 -- 3.11 0.407 20.2 53.2 7255 -- --
209.19 0.674 5.05 0.656 0.48 0.61 -- -- 0.232 19.7 45 30393 -- --
210.25 0.675 5.03 1.13 -- -0.329 -- 3.11 0.361 -- 54 7677 -- --
214.13 0.686 5.02 1.03 0.471 -- -0.789 -- 0.359 19.5 -- -- -- --
215.61 0.688 5.02 1.04 0.47 -- -- -- 0.356 20 -- -- -- --
219.52 0.69 5.04 0.805 -- 0.837 -- -- 0.238 -- 41.26 21525 -- --
218.25 0.688 5.07 -- 0.51 0.962 -- -- 0.208 19.9 46.37 30698 -- --
227.68 0.705 5.01 1.04 -- -- -- -- 0.35 -- -- -- -- --
244.19 0.731 5.05 -- 0.464 -- -- -- 0.24 20.2 -- -- -- --
228.73 0.704 5.07 -- -- 0.971 -- -- 0.0862 -- 47 30407 -- --
256.03 0.747 5.04 -- -- -- -- -- 0.235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.85 radiation 40 1440 > th dose dependent rect. 15 1
18 194.98 humidity 90 43200 < th dose independent rect. 1 1
19 195.38 humidity 90 43200 > th dose independent rect. 24 3
32 196.19 humidity 50 4320 > th dose independent rect. 11 3
34 196.20 humidity 90 43200 < th dose independent rect. 23 7
36 196.25 humidity 50 4320 > th dose independent rect. 3 11
48 196.41 humidity 50 4320 > th dose independent rect. 23 15
58 196.49 humidity 50 4320 > th dose independent rect. 19 19
60 196.54 humidity 50 4320 > th dose independent rect. 7 7
64 196.58 atmosphere 1015 1440 < th dose independent rect. 10 1
77 196.67 humidity 50 4320 > th dose independent rect. 5 9
87 196.80 atmosphere 1015 1440 < th dose independent rect. 7 4
88 196.81 atmosphere 1015 1440 > th dose independent rect. 10 1
105 196.81 atmosphere 1015 1440 > th dose dependent rect. 10 1
165 197.85 radiation 40 1440 > th dose independent rect. 15 1
186 197.95 humidity 50 4320 > th dose independent sin 7 NA
188 197.98 humidity 80 43200 > th dose dependent rect. 23 12
192 198.05 humidity 80 43200 > th dose dependent rect. 18 12
196 198.11 humidity 80 43200 > th dose dependent sin 9 NA
203 198.15 humidity 80 43200 < th dose dependent rect. 19 7
219 198.25 humidity 80 43200 > th dose dependent rect. 3 1
224 198.27 humidity 80 43200 < th dose dependent sin 9 NA
229 198.34 humidity 80 43200 > th dose dependent rect. 22 6
251 198.44 radiation 20 43200 < th dose dependent rect. 5 1
262 198.47 humidity 50 43200 < th dose independent rect. 16 17
269 198.52 humidity 50 43200 > th dose independent rect. 16 17
273 198.53 radiation 40 4320 < th dose independent rect. 15 1
279 198.54 humidity 80 43200 > th dose dependent rect. 24 1
287 198.56 radiation 40 43200 < th dose dependent rect. 3 3
301 198.60 atmosphere 995 30 > th dose independent rect. 3 23
302 198.60 humidity 80 43200 < th dose dependent rect. 20 3
314 198.63 humidity 80 43200 < th dose dependent rect. 19 15
323 198.67 humidity 50 43200 > th dose independent rect. 17 5
332 198.70 humidity 50 43200 > th dose independent rect. 17 7
333 198.70 humidity 50 43200 > th dose independent rect. 17 11
339 198.71 radiation 30 43200 < th dose dependent rect. 23 7
349 198.73 humidity 70 43200 < th dose independent rect. 19 7
394 198.79 humidity 50 43200 > th dose independent rect. 17 15
398 198.81 radiation 40 4320 < th dose independent rect. 15 3
423 198.86 humidity 90 14400 < th dose dependent rect. 5 2
434 198.91 humidity 90 43200 < th dose dependent rect. 2 3
438 198.93 radiation 10 43200 < th dose dependent rect. 17 13
445 198.95 humidity 50 43200 < th dose independent rect. 17 15
446 198.95 humidity 90 43200 < th dose dependent rect. 3 1
456 198.98 humidity 50 43200 < th dose independent rect. 17 5
491 199.09 radiation 1 43200 > th dose dependent rect. 17 13
517 199.20 wind 1 43200 < th dose dependent rect. 7 1
539 199.28 radiation 40 4320 < th dose independent rect. 15 13
542 199.31 wind 1 43200 < th dose independent rect. 8 5
566 199.38 humidity 80 43200 > th dose dependent rect. 5 1
567 199.38 wind 1 43200 < th dose dependent rect. 9 4
569 199.40 humidity 60 43200 < th dose dependent rect. 17 13
575 199.42 humidity 90 43200 < th dose independent sin 10 NA
576 199.42 radiation 40 4320 < th dose independent rect. 15 5
583 199.44 humidity 60 43200 < th dose dependent rect. 17 6
591 199.46 wind 1 43200 < th dose independent rect. 11 1
622 199.59 temperature 15 30 > th dose independent rect. 3 23
636 199.63 wind 3 14400 < th dose dependent rect. 24 1
651 199.69 humidity 70 43200 > th dose independent rect. 20 15
662 199.74 humidity 50 43200 < th dose independent rect. 17 2
665 199.75 humidity 50 43200 > th dose independent rect. 17 2
670 199.76 humidity 70 43200 > th dose independent rect. 19 11
683 199.78 humidity 50 43200 < th dose dependent rect. 16 1
690 199.80 wind 1 43200 > th dose independent rect. 8 5
691 199.80 humidity 70 43200 > th dose independent rect. 19 7
706 199.82 humidity 70 43200 < th dose independent rect. 20 16
714 199.85 radiation 1 43200 > th dose dependent rect. 17 2
731 199.89 wind 3 14400 < th dose independent rect. 16 14
742 199.92 humidity 70 43200 < th dose independent sin 8 NA
757 199.96 radiation 40 4320 < th dose independent rect. 15 9
758 199.96 radiation 10 43200 < th dose independent rect. 12 20
760 199.96 humidity 60 43200 < th dose dependent rect. 16 17
766 199.98 radiation 10 43200 < th dose independent rect. 15 17
771 200.00 radiation 10 43200 < th dose independent sin 13 NA
778 200.02 humidity 70 43200 > th dose independent sin 8 NA
780 200.02 wind 3 14400 > th dose independent rect. 17 13
782 200.02 radiation 40 43200 < th dose dependent rect. 17 1
809 200.08 atmosphere 995 43200 < th dose dependent rect. 11 4
820 200.10 wind 3 14400 < th dose independent rect. 16 16
885 200.22 wind 3 14400 > th dose independent rect. 16 16
928 200.30 wind 3 14400 < th dose independent sin 12 NA
935 200.30 wind 9 30 < th dose independent rect. 3 23
942 200.32 radiation 10 43200 < th dose independent rect. 16 2
961 200.35 temperature 20 10 > th dose dependent rect. 2 1
964 200.36 wind 3 14400 > th dose independent sin 12 NA
996 200.41 radiation 40 43200 > th dose dependent sin 12 NA