FiT-DB / Search/ Help/ Sample detail

Os09g0479000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.34 (0.027) R2 : 0.726
β1 : -1.62 (0.0996) R2dD : 0.168 R2D : 0.102
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.84 (0.0575) R2dE : 0.624 R2E : 0.558
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00475 (0.0578) R2dN8 : 6.5e-06 R2N8 : -0.000372
σ : 0.506
deviance : 117.97
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.79
memory length : 235
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 10.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.84 0.504 8.35 -1.52 0.303 1.6 0.585 0.485 -0.00978 23.8 19 216 17.2 9.62
114.52 0.498 8.35 -1.56 0.258 1.62 1 -- -0.0164 0.677 18.89 211 17.1 9.72
113.84 0.497 8.33 -1.49 0.155 1.74 -- 1.08 0.0368 22.6 18.88 225 17.1 9.79
117.98 0.506 8.35 -1.6 0.142 1.74 -- -- -0.00589 21.8 18.9 228 16.9 10
112.94 0.495 8.33 -1.51 -- 1.84 -- 1.08 0.0026 -- 18.79 235 16.8 10.1
154.97 0.584 8.37 -1.27 1.87 -- 1.59 -- 0.0495 23.6 -- -- -- --
165.91 0.603 8.37 -1.34 1.86 -- -- -- 0.0434 23.6 -- -- -- --
117.97 0.506 8.34 -1.62 -- 1.84 -- -- -0.00475 -- 18.79 235 16.8 10.1
178.84 0.623 8.3 -- 0.116 1.63 -- -- 0.211 21.4 15.97 193 17.1 10
383.34 0.915 8.33 -1.28 -- -- -- -- 0.0643 -- -- -- -- --
212.92 0.683 8.34 -- 1.85 -- -- -- 0.192 23.5 -- -- -- --
178.31 0.622 8.29 -- -- 1.71 -- -- 0.232 -- 16.2 209 16.9 9.98
426.84 0.964 8.3 -- -- -- -- -- 0.207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.55 temperature 20.0 270 > th dose independent rect. 17 9
2 121.69 radiation 1.0 90 > th dose independent rect. 13 18
3 121.82 radiation 40.0 270 < th dose dependent rect. 16 11
4 122.15 temperature 15.0 270 > th dose independent rect. 16 11
5 122.25 precipitation 0.1 270 < th dose independent rect. 3 13
6 122.25 precipitation 0.1 270 < th dose dependent rect. 3 13
7 122.42 radiation 20.0 270 < th dose independent rect. 16 11
9 122.76 precipitation 0.1 270 < th dose independent rect. 10 23
10 122.76 precipitation 0.1 270 < th dose dependent rect. 10 23
13 123.05 wind 1.0 270 > th dose independent rect. 11 20
14 123.06 temperature 10.0 270 > th dose dependent rect. 17 9
15 123.08 radiation 1.0 30 > th dose independent rect. 13 20
27 124.38 temperature 10.0 270 > th dose independent rect. 3 13
28 124.38 atmosphere 1015.0 270 < th dose independent rect. 3 13
29 124.41 wind 1.0 270 > th dose independent rect. 12 18
35 124.72 precipitation 0.1 270 < th dose independent rect. 11 20
36 124.72 precipitation 0.1 270 < th dose dependent rect. 11 20
40 124.95 wind 9.0 270 < th dose independent rect. 16 11
45 125.05 radiation 1.0 30 < th dose independent sin 13 NA
49 125.23 wind 9.0 270 < th dose independent rect. 3 13
51 125.39 radiation 1.0 30 < th dose dependent sin 13 NA
57 125.96 radiation 1.0 30 > th dose independent sin 12 NA
65 126.18 precipitation 0.1 270 < th dose independent rect. 21 10
66 126.18 precipitation 0.1 270 < th dose dependent rect. 21 10
70 126.25 temperature 20.0 90 > th dose independent rect. 8 20
72 126.30 atmosphere 1010.0 270 < th dose independent rect. 17 9
86 126.63 humidity 50.0 720 > th dose dependent rect. 17 2
94 126.88 atmosphere 995.0 270 > th dose independent rect. 16 11
96 126.95 temperature 15.0 270 > th dose independent rect. 7 14
97 126.97 precipitation 0.1 90 < th dose independent rect. 13 19
98 126.97 precipitation 0.1 90 < th dose dependent rect. 13 19
104 127.11 atmosphere 1015.0 270 < th dose independent rect. 7 14
128 127.59 wind 7.0 270 < th dose independent rect. 7 4
130 127.62 temperature 15.0 270 > th dose independent rect. 7 4
135 127.69 humidity 50.0 270 > th dose independent rect. 16 10
138 127.74 wind 9.0 270 < th dose independent rect. 11 20
146 127.90 precipitation 0.1 270 < th dose independent rect. 7 4
147 127.90 precipitation 0.1 270 < th dose dependent rect. 7 4
148 127.92 wind 7.0 270 < th dose independent rect. 21 10
150 127.96 atmosphere 995.0 270 > th dose independent rect. 7 4
151 127.96 atmosphere 1015.0 270 < th dose independent rect. 7 4
152 127.96 temperature 10.0 270 > th dose independent rect. 11 20
153 127.98 temperature 15.0 270 > th dose independent rect. 6 21
159 128.04 radiation 1.0 270 > th dose independent rect. 7 4
167 128.16 humidity 50.0 270 > th dose independent rect. 7 4
175 128.37 humidity 60.0 720 > th dose dependent rect. 8 20
181 128.46 humidity 60.0 720 > th dose independent rect. 17 2
185 128.49 radiation 20.0 270 < th dose independent rect. 21 10
195 128.57 wind 7.0 270 < th dose independent rect. 9 1
197 128.59 wind 9.0 270 < th dose dependent rect. 7 4
203 128.61 humidity 50.0 720 > th dose dependent rect. 15 13
205 128.63 radiation 1.0 270 > th dose independent rect. 9 1
206 128.63 humidity 70.0 270 > th dose independent rect. 21 10
208 128.65 temperature 15.0 270 > th dose independent rect. 9 1
209 128.65 precipitation 0.1 270 < th dose independent rect. 9 1
211 128.65 precipitation 0.1 270 < th dose dependent rect. 9 1
223 128.73 temperature 30.0 270 < th dose independent rect. 7 4
224 128.74 wind 1.0 270 > th dose independent rect. 9 1
227 128.75 atmosphere 995.0 270 > th dose independent rect. 9 1
228 128.75 atmosphere 1015.0 270 < th dose independent rect. 9 1
229 128.75 temperature 10.0 270 > th dose independent rect. 10 23
237 128.85 temperature 10.0 270 > th dose independent rect. 21 10
238 128.85 temperature 30.0 270 < th dose independent rect. 21 10
239 128.85 humidity 50.0 270 > th dose independent rect. 21 10
241 128.85 atmosphere 995.0 270 > th dose independent rect. 21 10
247 128.91 atmosphere 995.0 270 > th dose independent rect. 3 13
248 128.92 humidity 50.0 270 > th dose independent rect. 9 1
250 128.93 temperature 20.0 90 > th dose independent rect. 18 19
252 128.99 temperature 20.0 720 > th dose independent rect. 16 3
261 129.04 humidity 50.0 90 > th dose dependent rect. 17 11
289 129.36 wind 9.0 270 < th dose independent rect. 7 14
306 129.46 radiation 40.0 90 < th dose independent rect. 13 19
314 129.56 wind 1.0 270 > th dose independent rect. 7 4
317 129.58 wind 9.0 270 < th dose independent rect. 10 22
325 129.67 wind 9.0 90 < th dose independent rect. 13 19
348 129.79 temperature 10.0 90 > th dose independent rect. 13 19
360 129.86 radiation 40.0 270 < th dose independent rect. 7 4
381 129.94 precipitation 0.1 270 < th dose independent rect. 16 11
383 129.94 precipitation 0.1 270 < th dose dependent rect. 16 11
404 130.07 temperature 20.0 720 > th dose independent rect. 15 5
417 130.16 precipitation 0.1 270 < th dose independent rect. 6 6
418 130.16 humidity 70.0 720 > th dose independent rect. 15 13
419 130.16 precipitation 0.1 270 < th dose dependent rect. 6 6
427 130.20 radiation 40.0 10 < th dose independent rect. 13 20
429 130.21 atmosphere 995.0 270 > th dose independent rect. 6 6
430 130.21 atmosphere 1015.0 270 < th dose independent rect. 6 6
435 130.23 temperature 25.0 270 < th dose independent rect. 3 2
440 130.23 wind 9.0 10 < th dose independent rect. 13 20
459 130.35 wind 9.0 10 < th dose independent rect. 9 4
466 130.41 wind 9.0 270 < th dose dependent rect. 8 2
505 130.65 atmosphere 1010.0 10 < th dose independent rect. 18 11
514 130.70 temperature 10.0 10 > th dose independent rect. 9 4
516 130.70 atmosphere 995.0 10 > th dose independent rect. 9 4
517 130.70 atmosphere 1015.0 10 < th dose independent rect. 9 4
518 130.70 precipitation 0.1 10 < th dose independent rect. 9 4
519 130.70 wind 1.0 270 > th dose independent rect. 2 14
520 130.70 temperature 10.0 10 > th dose independent rect. 13 20
521 130.70 precipitation 0.1 10 < th dose dependent rect. 9 4
527 130.72 radiation 1.0 10 > th dose independent rect. 9 4
557 130.87 radiation 1.0 90 < th dose dependent rect. 5 23
558 130.88 temperature 10.0 1440 > th dose independent rect. 10 4
561 130.88 atmosphere 995.0 1440 > th dose independent rect. 10 4
562 130.88 temperature 10.0 1440 > th dose independent rect. 14 20
571 130.94 radiation 10.0 270 < th dose independent rect. 3 3
584 130.99 radiation 40.0 270 < th dose dependent rect. 21 10
588 131.03 precipitation 0.1 270 < th dose independent rect. 3 3
589 131.03 precipitation 0.1 270 < th dose dependent rect. 3 3
590 131.04 temperature 30.0 720 < th dose independent rect. 17 2
599 131.08 atmosphere 1015.0 270 < th dose independent rect. 6 21
609 131.14 temperature 25.0 270 < th dose independent rect. 2 4
611 131.14 atmosphere 995.0 10 > th dose dependent rect. 14 19
618 131.17 temperature 15.0 270 > th dose independent rect. 16 20
642 131.27 atmosphere 995.0 270 > th dose independent rect. 11 20
645 131.29 humidity 90.0 30 < th dose independent rect. 13 20
670 131.36 atmosphere 995.0 90 > th dose dependent rect. 14 18
693 131.45 humidity 70.0 720 > th dose independent rect. 8 20
698 131.47 humidity 50.0 10 > th dose dependent rect. 18 10
704 131.50 wind 1.0 720 > th dose independent rect. 10 14
726 131.62 humidity 90.0 10 < th dose independent rect. 9 4
737 131.65 radiation 40.0 270 < th dose independent rect. 7 19
748 131.67 humidity 90.0 720 < th dose dependent rect. 12 20
774 131.78 temperature 30.0 270 < th dose independent rect. 16 10
776 131.78 radiation 40.0 270 < th dose dependent rect. 7 19
786 131.82 atmosphere 1010.0 270 < th dose independent rect. 3 3
792 131.83 radiation 10.0 270 < th dose dependent rect. 3 3
795 131.84 humidity 60.0 720 > th dose dependent rect. 24 21
828 131.91 humidity 50.0 720 > th dose dependent rect. 15 21
835 131.94 atmosphere 995.0 10 > th dose independent rect. 9 20
847 131.99 humidity 50.0 10 > th dose independent rect. 9 5
850 132.00 wind 7.0 270 < th dose independent rect. 3 3
856 132.00 radiation 1.0 90 < th dose independent rect. 8 20
858 132.00 radiation 1.0 10 < th dose dependent rect. 17 12
868 132.04 humidity 70.0 720 > th dose independent rect. 24 20
870 132.05 atmosphere 1015.0 270 < th dose independent rect. 17 19
875 132.07 atmosphere 1015.0 10 < th dose independent rect. 9 20
894 132.14 temperature 10.0 270 > th dose independent rect. 3 3
897 132.14 humidity 50.0 270 > th dose independent rect. 3 3
900 132.14 atmosphere 995.0 270 > th dose independent rect. 3 3
906 132.14 radiation 1.0 90 < th dose independent rect. 11 17
926 132.20 atmosphere 1015.0 90 < th dose independent rect. 8 20
933 132.21 temperature 10.0 10 > th dose dependent rect. 18 11
943 132.26 radiation 40.0 720 < th dose dependent rect. 15 4
944 132.27 humidity 90.0 270 < th dose independent rect. 9 1
952 132.29 precipitation 0.1 90 < th dose independent rect. 23 10
953 132.29 precipitation 0.1 90 < th dose dependent rect. 23 10
957 132.30 radiation 1.0 90 < th dose dependent rect. 8 20