Os09g0478500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase KIPK.
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Os09g0478500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase KIPK.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.49 | 0.284 | 9.78 | 0.274 | 0.738 | -0.721 | -0.365 | -0.871 | 0.317 | 22.9 | 18.5 | 139 | -- | -- |
| 37.14 | 0.284 | 9.77 | 0.417 | 0.744 | -0.756 | -0.236 | -- | 0.36 | 23 | 18.69 | 139 | -- | -- |
| 36.97 | 0.283 | 9.78 | 0.322 | 0.751 | -0.712 | -- | -0.654 | 0.323 | 23 | 18.37 | 155 | -- | -- |
| 37.3 | 0.284 | 9.76 | 0.422 | 0.741 | -0.719 | -- | -- | 0.358 | 23 | 19.5 | 139 | -- | -- |
| 61.67 | 0.368 | 9.73 | 0.491 | -- | -1.19 | -- | -0.251 | 0.428 | -- | 18.73 | 58 | -- | -- |
| 45.41 | 0.316 | 9.79 | 0.265 | 0.871 | -- | -0.025 | -- | 0.235 | 0.108 | -- | -- | -- | -- |
| 45.41 | 0.316 | 9.79 | 0.266 | 0.871 | -- | -- | -- | 0.235 | 0.113 | -- | -- | -- | -- |
| 61.71 | 0.367 | 9.73 | 0.529 | -- | -1.21 | -- | -- | 0.439 | -- | 19.05 | 7 | -- | -- |
| 41.66 | 0.301 | 9.78 | -- | 0.774 | -0.571 | -- | -- | 0.288 | 23.2 | 21.49 | 125 | -- | -- |
| 93.12 | 0.451 | 9.77 | 0.294 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 47.27 | 0.322 | 9.79 | -- | 0.874 | -- | -- | -- | 0.205 | 0.13 | -- | -- | -- | -- |
| 68.4 | 0.386 | 9.74 | -- | -- | -1.06 | -- | -- | 0.36 | -- | 20.7 | 6 | -- | -- |
| 95.4 | 0.456 | 9.78 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 11 | 32.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 14 | 32.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 16 | 33.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 19 | 33.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 26 | 33.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 27 | 33.55 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 32 | 33.61 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 35 | 33.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 61 | 34.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 101 | 34.52 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 111 | 34.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 145 | 34.81 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 156 | 34.99 | humidity | 60.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 184 | 35.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 201 | 35.22 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 203 | 35.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 208 | 35.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 209 | 35.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 211 | 35.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 212 | 35.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 217 | 35.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 218 | 35.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 219 | 35.24 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 240 | 35.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 15 |
| 242 | 35.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 245 | 35.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 254 | 35.35 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 256 | 35.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 257 | 35.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 267 | 35.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 9 |
| 268 | 35.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 277 | 35.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 291 | 35.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 324 | 35.59 | temperature | 15.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 325 | 35.59 | temperature | 10.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 349 | 35.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 388 | 35.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 390 | 35.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 423 | 35.77 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 443 | 35.84 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 513 | 35.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 525 | 36.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 19 |
| 536 | 36.06 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 551 | 36.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 19 |
| 554 | 36.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 556 | 36.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 557 | 36.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 559 | 36.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 19 |
| 562 | 36.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 563 | 36.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 568 | 36.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 19 |
| 585 | 36.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 5 |
| 589 | 36.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 5 |
| 590 | 36.15 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 592 | 36.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 620 | 36.22 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 7 |
| 622 | 36.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 635 | 36.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 19 |
| 698 | 36.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 741 | 36.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 794 | 36.51 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 798 | 36.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 805 | 36.53 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 821 | 36.55 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 824 | 36.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 827 | 36.56 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 7 |
| 834 | 36.58 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 853 | 36.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 8 |
| 866 | 36.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 19 |
| 868 | 36.62 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 921 | 36.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 952 | 36.74 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 956 | 36.74 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 989 | 36.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 995 | 36.79 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 16 |