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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0478200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0215) R2 : 0.283
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.1 (0.382) R2dE : 0.281 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0716 (0.0454) R2dN8 : 0.00507 R2N8 : 0.00177
σ : 0.405
deviance : 75.51
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 30.7
memory length : 109
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.02
open length of G : 0.963

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.33 0.405 2.9 0.0214 0.128 4.57 -0.376 -0.97 0.0696 5.49 30.77 112 7 0.983
74.33 0.402 2.91 0.0239 0.128 5 -0.378 -- 0.0695 5.49 30.69 111 7.01 0.969
74.65 0.402 2.9 0.0271 0.134 4.58 -- -1.03 0.0693 6.05 30.78 109 7 0.983
74.64 0.402 2.9 0.0246 0.128 5.05 -- -- 0.0717 6.17 30.71 110 7.02 0.967
75.49 0.405 2.91 0.0241 -- 4.72 -- -0.828 0.0728 -- 30.64 107 6.96 1.01
102.1 0.474 2.91 -0.0502 0.189 -- -0.682 -- 0.0396 6.09 -- -- -- --
103.2 0.476 2.91 -0.0561 0.187 -- -- -- 0.0425 6.62 -- -- -- --
75.49 0.405 2.91 0.0288 -- 5.12 -- -- 0.0756 -- 30.78 113 7.01 0.967
74.66 0.402 2.9 -- 0.128 5.04 -- -- 0.069 6.16 30.74 110 7.02 0.966
105.02 0.479 2.91 -0.0516 -- -- -- -- 0.0463 -- -- -- -- --
103.28 0.475 2.91 -- 0.186 -- -- -- 0.0487 6.64 -- -- -- --
75.51 0.405 2.91 -- -- 5.1 -- -- 0.0716 -- 30.7 109 7.02 0.963
105.09 0.478 2.91 -- -- -- -- -- 0.052 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.70 radiation 30 90 > th dose dependent rect. 7 1
17 76.73 radiation 30 90 > th dose independent rect. 7 1
33 77.64 radiation 10 30 > th dose dependent rect. 17 15
35 77.74 radiation 10 30 > th dose dependent rect. 6 2
111 77.84 humidity 70 30 < th dose independent rect. 18 14
113 77.84 humidity 80 90 < th dose dependent rect. 3 4
114 77.84 humidity 70 10 < th dose dependent rect. 19 13
119 77.85 humidity 80 90 < th dose independent rect. 6 1
120 77.85 humidity 70 10 < th dose independent rect. 7 1
136 77.85 humidity 80 90 < th dose independent rect. 3 4
197 77.85 humidity 80 90 < th dose dependent rect. 6 1
198 77.85 humidity 70 10 < th dose dependent rect. 7 1
660 80.22 atmosphere 1005 10 > th dose dependent rect. 7 1
868 86.58 radiation 30 30 < th dose independent sin 11 NA
973 88.10 humidity 70 10 < th dose independent sin 11 NA