Os09g0478100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellulose synthase family protein.
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Os09g0478100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellulose synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.76 | 0.479 | 10.8 | -1.02 | 1.05 | 2.59 | -3.21 | 7.91 | 0.00476 | 10.4 | 0.6732 | 4251 | -- | -- |
| 124.52 | 0.52 | 10.6 | 0.103 | 1.2 | 1.03 | -3.21 | -- | 0.365 | 10.5 | 4.598 | 15747 | -- | -- |
| 123.04 | 0.517 | 10.8 | -0.953 | 1.48 | 2.67 | -- | 7.57 | 0.0403 | 10.5 | 0.8941 | 10224 | -- | -- |
| 131.03 | 0.533 | 10.5 | 0.335 | 1.21 | 1.21 | -- | -- | 0.426 | 11.1 | 2.67 | 27232 | -- | -- |
| 188.52 | 0.643 | 10.7 | -0.272 | -- | -0.917 | -- | 1.72 | -0.0223 | -- | 0.8941 | 10224 | -- | -- |
| 162.3 | 0.597 | 10.6 | -0.0931 | 1.34 | -- | -2.26 | -- | 0.00867 | 10.7 | -- | -- | -- | -- |
| 183.15 | 0.634 | 10.6 | -0.181 | 1.35 | -- | -- | -- | 0.00397 | 11 | -- | -- | -- | -- |
| 199.97 | 0.659 | 10.5 | 1.07 | -- | 2.2 | -- | -- | 0.75 | -- | 2.88 | 28431 | -- | -- |
| 134.02 | 0.539 | 10.5 | -- | 1.23 | 1.25 | -- | -- | 0.475 | 11 | 3.653 | 28612 | -- | -- |
| 296.87 | 0.805 | 10.7 | -0.211 | -- | -- | -- | -- | -0.006 | -- | -- | -- | -- | -- |
| 184.01 | 0.635 | 10.6 | -- | 1.35 | -- | -- | -- | 0.0242 | 11 | -- | -- | -- | -- |
| 206.68 | 0.672 | 10.7 | -- | -- | -0.929 | -- | -- | -0.0225 | -- | 4.053 | 29886 | -- | -- |
| 298.05 | 0.806 | 10.7 | -- | -- | -- | -- | -- | 0.0174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 90.89 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 3 | 90.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 4 | 90.91 | temperature | 20 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 9 | 90.97 | temperature | 20 | 43200 | < th | dose dependent | rect. | 14 | 16 |
| 13 | 90.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 16 |
| 38 | 91.07 | temperature | 20 | 43200 | < th | dose dependent | sin | 13 | NA |
| 69 | 91.12 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 71 | 91.13 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 19 |
| 138 | 91.22 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 146 | 91.24 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 160 | 91.24 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 210 | 91.30 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 330 | 91.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 331 | 91.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 344 | 91.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 372 | 91.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 379 | 91.95 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 383 | 91.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 395 | 92.02 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 397 | 92.04 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 413 | 92.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 423 | 92.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 433 | 92.16 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 441 | 92.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 442 | 92.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 456 | 92.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 467 | 92.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 520 | 92.40 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 640 | 92.69 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 660 | 92.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 17 |
| 663 | 92.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 722 | 92.91 | temperature | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 736 | 92.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 740 | 92.94 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 764 | 92.98 | temperature | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 767 | 92.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 834 | 93.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 837 | 93.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 870 | 93.20 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 20 |
| 924 | 93.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 956 | 93.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 13 |