Os09g0478000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CSLE1 (Fragment).
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Os09g0478000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CSLE1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 555.93 | 1.11 | 3.23 | 0.76 | 0.135 | 9.55 | 2.22 | 28.4 | 0.0989 | 17.1 | 9.471 | 31 | -- | -- |
| 582.85 | 1.12 | 3.15 | 0.416 | 0.00496 | 5.65 | 4.27 | -- | -0.00726 | 16.7 | 9.948 | 31 | -- | -- |
| 563.53 | 1.11 | 3.23 | 0.754 | 0.311 | 10.5 | -- | 32.6 | 0.109 | 21 | 9.736 | 31 | -- | -- |
| 572.28 | 1.11 | 3.19 | 0.572 | 0.048 | 3.33 | -- | -- | 0.132 | 15.6 | 9.606 | 31 | -- | -- |
| 569.17 | 1.11 | 3.22 | 0.767 | -- | 10.7 | -- | 33.5 | 0.105 | -- | 9.687 | 31 | -- | -- |
| 580.09 | 1.13 | 3.19 | 0.484 | 0.222 | -- | 1.94 | -- | 0.0688 | 17.4 | -- | -- | -- | -- |
| 586.07 | 1.13 | 3.19 | 0.474 | 0.337 | -- | -- | -- | 0.0754 | 20.3 | -- | -- | -- | -- |
| 571.85 | 1.11 | 3.17 | 0.564 | -- | 3.09 | -- | -- | 0.108 | -- | 9.6 | 31 | -- | -- |
| 578.54 | 1.12 | 3.25 | -- | 0.226 | 2.73 | -- | -- | -0.0952 | 23.7 | 9.593 | 31 | -- | -- |
| 592.37 | 1.14 | 3.18 | 0.472 | -- | -- | -- | -- | 0.0717 | -- | -- | -- | -- | -- |
| 592 | 1.14 | 3.2 | -- | 0.335 | -- | -- | -- | 0.0226 | 20.4 | -- | -- | -- | -- |
| 580.15 | 1.12 | 3.18 | -- | -- | 2.89 | -- | -- | 0.0439 | -- | 9.6 | 31 | -- | -- |
| 598.25 | 1.14 | 3.19 | -- | -- | -- | -- | -- | 0.0193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 550.25 | wind | 9.0 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 5 | 552.76 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 6 | 553.32 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 4 | 17 |
| 11 | 553.57 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 21 | 2 |
| 12 | 553.71 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 23 | 3 |
| 13 | 553.86 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 15 | 554.32 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 4 | 19 |
| 20 | 554.36 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 23 | 554.49 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 26 | 554.60 | wind | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 28 | 554.83 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 30 | 554.93 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 37 | 555.20 | wind | 9.0 | 30 | > th | dose independent | rect. | 17 | 19 |
| 42 | 555.29 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 15 |
| 46 | 555.35 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 48 | 555.46 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 50 | 555.60 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 54 | 555.60 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 58 | 555.62 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 59 | 555.62 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 64 | 555.62 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 211 | 555.62 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 212 | 555.62 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 217 | 555.62 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 365 | 555.68 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 3 |
| 367 | 555.75 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 368 | 555.80 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 373 | 555.87 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 376 | 555.91 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 3 | 9 |
| 394 | 556.36 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 406 | 556.53 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 408 | 556.54 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 415 | 556.66 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 12 | NA |
| 420 | 556.71 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 425 | 556.77 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 439 | 556.92 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 450 | 557.07 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 15 | NA |
| 480 | 557.14 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 486 | 557.18 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 520 | 557.50 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 0 | NA |
| 521 | 557.50 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 4 |
| 536 | 557.65 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 1 | 22 |
| 549 | 557.71 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 560 | 557.92 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 583 | 558.09 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 586 | 558.11 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 593 | 558.15 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 600 | 558.18 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 609 | 558.24 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 620 | 558.27 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 633 | 558.33 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 659 | 558.49 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 660 | 558.49 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 8 |
| 668 | 558.53 | wind | 9.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 684 | 558.65 | atmosphere | 1000.0 | 720 | > th | dose independent | no | NA | NA |
| 691 | 558.67 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 695 | 558.70 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 18 | 7 |
| 714 | 558.82 | radiation | 10.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 752 | 558.96 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 20 | 1 |
| 754 | 558.96 | wind | 9.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 766 | 559.03 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 23 |
| 815 | 559.10 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 843 | 559.18 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 898 | 559.41 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 2 | 20 |
| 936 | 559.50 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 938 | 559.51 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 942 | 559.52 | atmosphere | 1000.0 | 720 | < th | dose independent | no | NA | NA |
| 964 | 559.55 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 983 | 559.64 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 1 |