Os09g0477700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0477700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.87 | 0.37 | 3.35 | 0.35 | 0.23 | -0.339 | 0.214 | -1.15 | -0.199 | 8.31 | 76.9 | 4818 | -- | -- |
| 63.45 | 0.371 | 3.34 | 0.185 | 0.214 | -0.344 | 0.113 | -- | -0.238 | 8.05 | 76 | 4632 | -- | -- |
| 61.98 | 0.367 | 3.35 | 0.344 | 0.226 | -0.338 | -- | -1.09 | -0.201 | 8.12 | 76.73 | 4748 | -- | -- |
| 63.45 | 0.371 | 3.34 | 0.191 | 0.21 | -0.346 | -- | -- | -0.238 | 8.03 | 73.4 | 4617 | -- | -- |
| 64.3 | 0.373 | 3.35 | 0.312 | -- | -0.302 | -- | -0.998 | -0.19 | -- | 73.53 | 4505 | -- | -- |
| 64.88 | 0.378 | 3.31 | 0.149 | 0.19 | -- | 0.115 | -- | -0.0904 | 8.77 | -- | -- | -- | -- |
| 64.92 | 0.377 | 3.31 | 0.152 | 0.19 | -- | -- | -- | -0.0905 | 8.65 | -- | -- | -- | -- |
| 65.6 | 0.377 | 3.34 | 0.186 | -- | -0.317 | -- | -- | -0.215 | -- | 72 | 4351 | -- | -- |
| 64.36 | 0.374 | 3.34 | -- | 0.206 | -0.295 | -- | -- | -0.234 | 8.04 | 72.64 | 4590 | -- | -- |
| 66.96 | 0.382 | 3.31 | 0.153 | -- | -- | -- | -- | -0.0889 | -- | -- | -- | -- | -- |
| 65.53 | 0.379 | 3.31 | -- | 0.191 | -- | -- | -- | -0.107 | 8.59 | -- | -- | -- | -- |
| 66.48 | 0.38 | 3.34 | -- | -- | -0.286 | -- | -- | -0.216 | -- | 69 | 4372 | -- | -- |
| 67.58 | 0.384 | 3.31 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.00 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 10 |
| 5 | 60.27 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 9 | 60.60 | wind | 7 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 10 | 60.62 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 60.68 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 11 |
| 15 | 60.75 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 21 | 60.80 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 2 |
| 26 | 60.84 | humidity | 90 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 27 | 60.84 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 9 |
| 39 | 61.00 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 43 | 61.01 | humidity | 70 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 44 | 61.03 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 48 | 61.04 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 51 | 61.04 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 79 | 61.15 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 106 | 61.34 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 110 | 61.35 | humidity | 80 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 124 | 61.40 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 128 | 61.42 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 23 |
| 142 | 61.46 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 161 | 61.51 | humidity | 70 | 4320 | > th | dose dependent | sin | 8 | NA |
| 166 | 61.52 | wind | 5 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 173 | 61.54 | humidity | 90 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 194 | 61.58 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 221 | 61.59 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 258 | 61.64 | humidity | 50 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 286 | 61.67 | humidity | 60 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 323 | 61.71 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 1 |
| 350 | 61.74 | humidity | 90 | 4320 | < th | dose dependent | sin | 9 | NA |
| 360 | 61.76 | humidity | 80 | 4320 | < th | dose independent | sin | 8 | NA |
| 370 | 61.77 | humidity | 80 | 4320 | > th | dose independent | sin | 8 | NA |
| 396 | 61.80 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 2 | 1 |
| 403 | 61.80 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 15 |
| 413 | 61.81 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 3 |
| 432 | 61.83 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 464 | 61.86 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 473 | 61.87 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 502 | 61.88 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 546 | 61.93 | wind | 3 | 90 | < th | dose independent | rect. | 2 | 1 |
| 602 | 61.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 620 | 61.98 | radiation | 40 | 10 | < th | dose independent | sin | 4 | NA |
| 633 | 61.99 | radiation | 40 | 10 | > th | dose independent | sin | 5 | NA |
| 634 | 61.99 | humidity | 80 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 641 | 61.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 647 | 62.00 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 687 | 62.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 691 | 62.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 692 | 62.03 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 23 |
| 743 | 62.07 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 764 | 62.08 | radiation | 30 | 10 | < th | dose independent | rect. | 14 | 12 |
| 786 | 62.09 | wind | 7 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 801 | 62.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 827 | 62.11 | radiation | 40 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 831 | 62.12 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 2 |
| 898 | 62.14 | radiation | 30 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 958 | 62.16 | radiation | 40 | 10 | < th | dose independent | rect. | 15 | 23 |
| 962 | 62.16 | radiation | 30 | 10 | > th | dose dependent | rect. | 9 | 3 |