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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0477100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0319) R2 : 0.00451
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0967 (0.0672) R2dN8 : 0.00583 R2N8 : 0.00451
σ : 0.602
deviance : 166.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.67 0.563 2.88 0.00951 0.0863 7.42 -0.099 15.1 0.114 15.1 3.048 10 5.97 1.87
145.74 0.562 2.83 0.0641 0.0462 5.12 -0.18 -- 0.205 13 2.8 5 5.97 1.97
143.67 0.558 2.88 0.00837 0.0861 7.5 -- 15.5 0.113 15.4 3.154 9 5.94 1.86
144.43 0.56 2.87 -0.0178 0.0603 4.38 -- -- 0.118 12.7 2.795 4 5.95 1.9
144.08 0.559 2.88 0.00503 -- 7.5 -- 15.7 0.11 -- 3.165 9 5.94 1.86
165.76 0.604 2.87 -0.05 0.0515 -- -0.121 -- 0.0915 11.7 -- -- -- --
165.82 0.603 2.87 -0.0545 0.0531 -- -- -- 0.0913 12.5 -- -- -- --
144.68 0.56 2.87 -0.025 -- 4.43 -- -- 0.111 -- 2.8 6 5.95 1.91
144.28 0.559 2.87 -- 0.0862 4.47 -- -- 0.115 15.4 2.793 4 5.95 1.92
166 0.602 2.87 -0.0564 -- -- -- -- 0.0904 -- -- -- -- --
165.9 0.603 2.87 -- 0.0539 -- -- -- 0.0974 12.6 -- -- -- --
144.7 0.56 2.87 -- -- 4.43 -- -- 0.114 -- 2.8 6 5.95 1.9
166.08 0.602 2.87 -- -- -- -- -- 0.0967 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.24 wind 3.0 10 > th dose dependent rect. 6 1
3 144.80 wind 3.0 10 > th dose independent rect. 5 2
22 147.65 precipitation 0.1 10 > th dose dependent rect. 4 4
36 147.66 precipitation 0.1 10 > th dose independent rect. 4 4
52 147.67 precipitation 0.1 90 > th dose independent rect. 4 1
53 147.67 precipitation 0.1 10 > th dose independent rect. 4 2
57 147.67 precipitation 0.1 90 > th dose dependent rect. 4 1
58 147.67 precipitation 0.1 10 > th dose dependent rect. 4 2
182 151.28 radiation 1.0 10 < th dose independent rect. 6 1
245 154.96 atmosphere 1005.0 90 < th dose dependent rect. 20 1
249 155.19 precipitation 0.1 10 > th dose dependent sin 0 NA
250 155.20 precipitation 0.1 10 > th dose independent sin 0 NA
256 155.43 precipitation 0.1 10 < th dose independent sin 1 NA
258 155.43 precipitation 0.1 10 < th dose dependent sin 1 NA
273 155.55 atmosphere 1005.0 10 < th dose dependent rect. 22 1
276 155.79 temperature 30.0 90 > th dose independent rect. 12 1
292 155.90 wind 5.0 270 > th dose dependent rect. 2 1
298 155.98 precipitation 0.1 90 > th dose independent rect. 24 7
316 156.23 wind 7.0 270 > th dose independent rect. 2 1
363 156.68 humidity 90.0 270 < th dose dependent rect. 2 1
389 157.05 precipitation 0.1 90 > th dose independent sin 6 NA
391 157.13 precipitation 0.1 90 > th dose dependent sin 6 NA
394 157.23 precipitation 0.1 90 < th dose independent sin 7 NA
395 157.23 precipitation 0.1 90 < th dose dependent sin 7 NA
399 157.40 humidity 90.0 270 < th dose independent rect. 2 1
405 157.50 atmosphere 1000.0 30 > th dose independent rect. 12 1
412 157.58 humidity 60.0 30 > th dose independent rect. 12 1
417 157.62 temperature 20.0 30 > th dose independent rect. 12 1
419 157.66 wind 7.0 30 < th dose independent rect. 12 1
435 157.71 humidity 90.0 30 < th dose independent rect. 12 1
437 157.72 wind 9.0 30 < th dose dependent rect. 12 1
439 157.73 radiation 20.0 30 > th dose dependent rect. 12 1
440 157.74 temperature 10.0 1440 > th dose independent rect. 13 1
444 157.74 atmosphere 995.0 1440 > th dose independent rect. 13 1
447 157.74 atmosphere 1010.0 30 < th dose independent rect. 12 1
448 157.74 radiation 20.0 30 > th dose independent rect. 12 1
449 157.74 temperature 10.0 1440 > th dose independent rect. 14 23
459 157.76 temperature 10.0 30 > th dose dependent rect. 12 1
468 157.77 radiation 1.0 30 > th dose dependent rect. 12 1
480 157.80 wind 1.0 30 > th dose independent rect. 12 1
486 157.82 temperature 10.0 30 > th dose independent rect. 12 1
490 157.82 radiation 1.0 30 > th dose independent rect. 12 1
491 157.82 precipitation 0.1 30 < th dose independent rect. 12 1
492 157.82 temperature 10.0 30 > th dose independent rect. 13 23
493 157.82 precipitation 0.1 30 < th dose dependent rect. 12 1
498 157.88 atmosphere 1015.0 30 < th dose dependent rect. 12 1
501 157.90 radiation 40.0 10 > th dose independent sin 13 NA
507 157.93 atmosphere 995.0 30 > th dose dependent rect. 12 1
509 157.94 humidity 50.0 30 > th dose dependent rect. 12 1
512 157.96 temperature 30.0 30 < th dose independent rect. 12 1
514 157.98 precipitation 0.1 90 < th dose independent sin 4 NA
517 157.98 precipitation 0.1 90 < th dose dependent sin 4 NA
539 158.11 temperature 15.0 30 > th dose dependent rect. 2 1
543 158.12 wind 3.0 30 < th dose dependent rect. 2 1
550 158.13 atmosphere 1005.0 30 > th dose dependent rect. 2 1
553 158.15 wind 3.0 30 < th dose independent rect. 2 1
554 158.15 atmosphere 1005.0 30 > th dose independent rect. 2 1
557 158.16 temperature 20.0 30 > th dose independent rect. 2 1
564 158.18 temperature 10.0 30 > th dose independent rect. 2 1
566 158.18 temperature 30.0 30 < th dose independent rect. 2 1
567 158.18 humidity 50.0 30 > th dose independent rect. 2 1
571 158.18 atmosphere 995.0 30 > th dose independent rect. 2 1
572 158.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
574 158.18 radiation 1.0 30 < th dose independent rect. 2 1
579 158.18 precipitation 0.1 30 < th dose independent rect. 2 1
583 158.18 temperature 10.0 30 > th dose independent rect. 3 23
584 158.18 radiation 1.0 30 < th dose dependent rect. 2 1
589 158.18 precipitation 0.1 30 < th dose dependent rect. 2 1
590 158.19 humidity 50.0 30 > th dose dependent rect. 2 1
596 158.21 humidity 90.0 30 < th dose dependent rect. 12 1
599 158.22 radiation 40.0 10 > th dose independent rect. 12 3
618 158.23 wind 1.0 30 > th dose dependent rect. 12 1
642 158.33 precipitation 0.1 10 < th dose independent rect. 13 23
646 158.33 precipitation 0.1 10 < th dose dependent rect. 13 23
651 158.35 atmosphere 1015.0 30 < th dose dependent rect. 2 1
682 158.53 temperature 30.0 30 < th dose dependent rect. 2 1
683 158.55 wind 5.0 720 < th dose independent rect. 23 2
768 158.81 wind 1.0 30 > th dose independent rect. 2 1
860 158.99 humidity 60.0 720 > th dose dependent rect. 23 2
870 159.03 radiation 1.0 10 < th dose dependent rect. 6 1
897 159.14 wind 9.0 720 < th dose dependent rect. 22 3
901 159.17 humidity 90.0 270 < th dose independent rect. 1 4
964 159.30 atmosphere 995.0 30 > th dose independent rect. 13 23
966 159.31 wind 3.0 10 > th dose independent rect. 24 7
969 159.32 radiation 30.0 10 > th dose dependent rect. 12 4