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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0476700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0525) R2 : 0.155
β1 : -0.791 (0.205) R2dD : 0.0336 R2D : -0.0138
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.02 (0.563) R2dE : 0.0162 R2E : -0.0791
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -34.7 (4.93) R2dD*E : 0.251 R2D*E : 0.105
γ1 : -0.11 (0.114) R2dN8 : 0.00246 R2N8 : -0.0067
σ : 0.966
deviance : 430.28
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 28
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 1.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
429.7 0.974 2.84 -0.788 0.108 -0.969 -0.0342 -34.7 -0.115 7.64 1006 29 18.2 1.22
453.89 1 2.89 -0.26 0.173 4.11 0.336 -- -0.123 7.35 1007 17 17.1 2.7
429.7 0.965 2.84 -0.79 0.106 -0.97 -- -34.7 -0.116 7.74 1006 29 18.2 1.21
453.09 0.998 2.89 -0.264 0.164 4.85 -- -- -0.112 7.21 1007 7 17 2.58
430.28 0.966 2.84 -0.791 -- -1.02 -- -34.7 -0.11 -- 1005 28 18.2 1.18
506.77 1.06 2.86 -0.235 0.0592 -- -0.525 -- 0.0474 19 -- -- -- --
507.44 1.05 2.86 -0.224 0.0654 -- -- -- 0.0467 17.3 -- -- -- --
454.44 0.993 2.89 -0.261 -- 4.73 -- -- -0.103 -- 1007 2 17.1 2.61
454.92 0.993 2.88 -- 0.161 4.76 -- -- -0.084 7.33 1007 3 17.1 2.63
507.66 1.05 2.86 -0.226 -- -- -- -- 0.045 -- -- -- -- --
508.76 1.06 2.85 -- 0.0692 -- -- -- 0.0716 17.2 -- -- -- --
456.23 0.995 2.88 -- -- 4.68 -- -- -0.0743 -- 1007 2 17.1 2.54
509.01 1.05 2.85 -- -- -- -- -- 0.0701 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 433.66 atmosphere 1005.0 30 > th dose dependent rect. 18 1
2 434.16 temperature 30.0 30 < th dose independent rect. 18 1
3 434.34 humidity 70.0 30 > th dose independent rect. 18 1
4 434.64 humidity 60.0 30 > th dose dependent rect. 18 1
6 436.38 radiation 1.0 14400 < th dose dependent rect. 19 1
9 442.83 radiation 1.0 30 < th dose dependent rect. 18 1
19 444.14 temperature 25.0 30 > th dose independent rect. 18 1
21 444.29 radiation 1.0 30 < th dose independent rect. 18 1
23 444.44 temperature 10.0 1440 > th dose independent rect. 19 1
26 444.44 temperature 30.0 1440 < th dose independent rect. 19 1
30 444.44 humidity 50.0 1440 > th dose independent rect. 19 1
32 444.44 atmosphere 995.0 1440 > th dose independent rect. 19 1
36 444.44 radiation 1.0 1440 < th dose independent rect. 19 1
56 444.44 temperature 10.0 1440 > th dose independent rect. 20 23
59 444.44 radiation 1.0 1440 < th dose dependent rect. 19 1
68 445.14 atmosphere 1005.0 30 > th dose independent rect. 18 1
70 445.24 wind 7.0 30 < th dose independent rect. 18 1
71 445.44 wind 3.0 30 > th dose independent rect. 18 1
76 445.56 temperature 30.0 30 < th dose dependent rect. 18 1
77 445.64 humidity 80.0 30 < th dose independent rect. 18 1
83 445.91 temperature 10.0 30 > th dose independent rect. 18 1
86 445.91 atmosphere 1010.0 30 < th dose independent rect. 18 1
91 445.91 precipitation 0.1 30 < th dose independent rect. 18 1
92 445.91 temperature 10.0 30 > th dose independent rect. 19 23
93 445.91 precipitation 0.1 30 < th dose dependent rect. 18 1
94 445.93 atmosphere 995.0 30 > th dose independent rect. 18 1
97 446.06 wind 9.0 30 < th dose dependent rect. 18 1
99 446.21 temperature 10.0 30 > th dose dependent rect. 18 1
102 446.49 wind 1.0 30 > th dose dependent rect. 18 1
107 447.71 atmosphere 1015.0 30 < th dose dependent rect. 18 1
116 449.12 humidity 90.0 30 < th dose dependent rect. 18 1
122 449.86 atmosphere 995.0 30 > th dose independent rect. 19 23
168 455.84 precipitation 0.1 30 < th dose independent rect. 19 23
169 455.84 precipitation 0.1 30 < th dose dependent rect. 19 23
173 458.09 wind 9.0 30 < th dose independent rect. 19 23
231 467.66 humidity 50.0 30 > th dose independent rect. 19 23
237 469.60 humidity 80.0 90 < th dose dependent rect. 3 3
239 469.63 humidity 80.0 270 < th dose independent rect. 2 1
240 469.63 humidity 80.0 270 < th dose dependent rect. 2 1
241 469.68 humidity 80.0 10 < th dose independent rect. 3 4
267 472.43 humidity 90.0 1440 < th dose dependent rect. 2 1
280 473.48 humidity 80.0 270 < th dose dependent rect. 1 6
291 474.43 humidity 80.0 1440 > th dose independent rect. 3 1
341 475.90 humidity 80.0 270 < th dose independent rect. 24 8
361 476.56 temperature 30.0 30 < th dose independent rect. 19 23
367 476.70 radiation 20.0 30 < th dose dependent rect. 18 16
461 478.21 humidity 80.0 1440 > th dose independent rect. 1 6
465 478.26 humidity 80.0 720 < th dose dependent rect. 22 10
488 478.42 humidity 80.0 720 > th dose independent rect. 22 10
572 478.66 humidity 80.0 720 > th dose independent rect. 22 8
674 480.06 temperature 25.0 30 > th dose dependent rect. 18 12
742 480.84 radiation 10.0 270 > th dose dependent rect. 16 1
773 481.01 radiation 20.0 270 > th dose independent rect. 16 1
793 481.05 humidity 80.0 720 < th dose independent sin 9 NA
868 482.18 humidity 50.0 1440 > th dose dependent rect. 2 1
875 482.20 radiation 20.0 30 < th dose independent rect. 18 16
898 482.51 temperature 20.0 270 > th dose dependent rect. 15 4
922 482.85 wind 1.0 90 > th dose independent rect. 19 23
930 482.98 humidity 50.0 10 > th dose dependent rect. 18 16
949 483.18 humidity 80.0 720 > th dose independent sin 8 NA