Os09g0474800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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Os09g0474800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.64 | 0.369 | 12.3 | 0.639 | 0.859 | 0.745 | 0.351 | -0.0834 | 0.645 | 5.13 | 1015 | 6726 | -- | -- |
| 61.66 | 0.366 | 12.3 | 0.66 | 0.862 | 0.748 | 0.348 | -- | 0.649 | 5.13 | 1015 | 6743 | -- | -- |
| 61.94 | 0.367 | 12.3 | 0.641 | 0.861 | 0.743 | -- | -0.0746 | 0.644 | 5.09 | 1015 | 6743 | -- | -- |
| 61.96 | 0.367 | 12.3 | 0.661 | 0.862 | 0.747 | -- | -- | 0.649 | 5.1 | 1015 | 6743 | -- | -- |
| 100.72 | 0.467 | 12.4 | 0.671 | -- | 0.73 | -- | -0.18 | 0.66 | -- | 1015 | 6629 | -- | -- |
| 81.8 | 0.424 | 12.3 | 0.989 | 0.872 | -- | 0.278 | -- | 0.82 | 5.15 | -- | -- | -- | -- |
| 81.99 | 0.424 | 12.3 | 0.989 | 0.873 | -- | -- | -- | 0.819 | 5.13 | -- | -- | -- | -- |
| 100.68 | 0.467 | 12.3 | 0.651 | -- | 0.819 | -- | -- | 0.661 | -- | 1015 | 6520 | -- | -- |
| 71.9 | 0.395 | 12.3 | -- | 0.873 | 0.831 | -- | -- | 0.632 | 5.16 | 1015 | 28903 | -- | -- |
| 121.95 | 0.516 | 12.3 | 1.02 | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
| 107.77 | 0.486 | 12.3 | -- | 0.891 | -- | -- | -- | 0.709 | 5.09 | -- | -- | -- | -- |
| 107.07 | 0.482 | 12.4 | -- | -- | 1.17 | -- | -- | 0.566 | -- | 1016 | 6596 | -- | -- |
| 149.4 | 0.571 | 12.3 | -- | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 2 | 61.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 3 | 61.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 4 | 61.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 5 | 61.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 6 | 61.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 7 | 61.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 8 | 61.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 24 | 62.36 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 46 | 63.87 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 47 | 63.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 52 | 64.28 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 60 | 64.52 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 21 |
| 65 | 64.64 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 66 | 64.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 73 | 64.76 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 75 | 64.81 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 89 | 64.97 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 92 | 65.00 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 95 | 65.03 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 100 | 65.07 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 20 | 18 |
| 121 | 65.12 | wind | 9.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 122 | 65.12 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 131 | 65.13 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 142 | 65.14 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 156 | 65.15 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 195 | 65.20 | humidity | 50.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 198 | 65.20 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 203 | 65.20 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 213 | 65.21 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 216 | 65.21 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 224 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | no | NA | NA |
| 225 | 65.22 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 227 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 228 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 229 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 235 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 236 | 65.22 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 241 | 65.22 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 19 |
| 249 | 65.22 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 21 |
| 250 | 65.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 285 | 65.23 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 338 | 65.24 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 345 | 65.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 364 | 65.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 367 | 65.25 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 12 | 19 |
| 369 | 65.25 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 379 | 65.26 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 388 | 65.27 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 543 | 65.32 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 546 | 65.32 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 550 | 65.32 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 1 | 18 |
| 605 | 65.34 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 612 | 65.34 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 634 | 65.35 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 661 | 65.36 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 23 | NA |
| 683 | 65.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 695 | 65.37 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 701 | 65.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 722 | 65.38 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 732 | 65.38 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 761 | 65.39 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 766 | 65.39 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 794 | 65.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 840 | 65.42 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 862 | 65.42 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 890 | 65.43 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 896 | 65.43 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 9 | 8 |
| 932 | 65.44 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 962 | 65.45 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 989 | 65.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 15 | 23 |