Os09g0474300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat-shock protein precursor.
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Os09g0474300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat-shock protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.29 | 0.555 | 8.09 | 1.69 | 1.96 | -2.84 | 1.02 | 1.88 | 0.241 | 17.7 | 14.74 | 745 | 16.9 | 4.85 |
| 144.06 | 0.559 | 8.1 | 1.58 | 2.02 | -2.72 | 0.374 | -- | 0.212 | 17.6 | 14.24 | 753 | 16.8 | 4.77 |
| 138.45 | 0.548 | 8.1 | 1.56 | 2.18 | -2.75 | -- | 1.43 | 0.173 | 17.8 | 13.57 | 788 | 16.3 | 4.6 |
| 142.18 | 0.555 | 8.11 | 1.49 | 2.16 | -2.74 | -- | -- | 0.186 | 17.8 | 13.78 | 785 | 16.3 | 4.6 |
| 170.3 | 0.608 | 8.02 | 1.38 | -- | -4.07 | -- | 0.471 | 0.269 | -- | 11.29 | 685 | 18.1 | 7.06 |
| 239.18 | 0.725 | 8.15 | 1.05 | 3.67 | -- | 0.438 | -- | -0.0224 | 15.5 | -- | -- | -- | -- |
| 239.77 | 0.725 | 8.15 | 1.06 | 3.68 | -- | -- | -- | -0.0199 | 15.5 | -- | -- | -- | -- |
| 167.56 | 0.603 | 8.05 | 1.43 | -- | -4.11 | -- | -- | 0.338 | -- | 10.39 | 654 | 18.4 | 7.2 |
| 192.85 | 0.647 | 8.17 | -- | 2.18 | -2.42 | -- | -- | -0.005 | 17.5 | 12.1 | 783 | 16.5 | 4.27 |
| 994.12 | 1.47 | 8.14 | 0.901 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 269.15 | 0.767 | 8.17 | -- | 3.66 | -- | -- | -- | -0.137 | 15.5 | -- | -- | -- | -- |
| 218.53 | 0.688 | 8.07 | -- | -- | -3.87 | -- | -- | 0.139 | -- | 7.909 | 644 | 18.6 | 6.88 |
| 1015.54 | 1.49 | 8.17 | -- | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.02 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 9 | 149.26 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 25 | 155.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 44 | 158.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 46 | 158.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 53 | 159.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 63 | 161.31 | temperature | 20.0 | 90 | > th | dose independent | rect. | 14 | 16 |
| 78 | 162.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 108 | 163.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 169 | 167.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 171 | 167.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 187 | 167.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 188 | 167.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 216 | 168.91 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 220 | 169.05 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 222 | 169.07 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 226 | 169.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 228 | 169.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 229 | 169.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 232 | 169.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 233 | 169.16 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 235 | 169.16 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 238 | 169.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 240 | 169.18 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 248 | 169.21 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 251 | 169.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 261 | 169.44 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 282 | 169.85 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 286 | 169.94 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 2 |
| 291 | 170.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 301 | 170.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 309 | 170.52 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 340 | 170.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 352 | 171.08 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 364 | 171.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 381 | 171.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 383 | 171.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 406 | 171.75 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 420 | 171.98 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 449 | 172.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 452 | 172.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 460 | 172.72 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 470 | 172.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 471 | 172.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 478 | 172.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 479 | 172.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 482 | 172.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 483 | 172.86 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 486 | 172.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 499 | 172.99 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 618 | 174.35 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 627 | 174.45 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 658 | 174.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 686 | 175.08 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 691 | 175.15 | temperature | 15.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 706 | 175.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 707 | 175.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 769 | 175.93 | temperature | 25.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 913 | 177.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 954 | 177.79 | temperature | 25.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 957 | 177.82 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 970 | 177.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 986 | 178.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 5 |