Os09g0473900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0473900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.82 | 0.332 | 8.45 | 0.85 | 1.47 | -0.665 | -0.429 | 8.8 | -0.125 | 7.92 | 30.17 | 1198 | -- | -- |
| 53.18 | 0.34 | 8.6 | -0.55 | 1.54 | 0.551 | -0.348 | -- | -0.129 | 7.88 | 35.26 | 1948 | -- | -- |
| 50.34 | 0.33 | 8.44 | 0.852 | 1.47 | -0.685 | -- | 9 | -0.126 | 7.94 | 30.32 | 1180 | -- | -- |
| 53.25 | 0.34 | 8.62 | -0.612 | 1.49 | 0.65 | -- | -- | -0.141 | 7.88 | 35.35 | 2007 | -- | -- |
| 165.98 | 0.6 | 8.42 | 1.28 | -- | -0.884 | -- | 10.3 | -0.0853 | -- | 29.82 | 1403 | -- | -- |
| 58.19 | 0.358 | 8.63 | -0.531 | 1.48 | -- | -0.451 | -- | -0.19 | 7.79 | -- | -- | -- | -- |
| 58.77 | 0.359 | 8.63 | -0.542 | 1.48 | -- | -- | -- | -0.189 | 7.79 | -- | -- | -- | -- |
| 173.08 | 0.613 | 8.66 | -0.592 | -- | 0.528 | -- | -- | -0.126 | -- | 35.1 | 2723 | -- | -- |
| 63.02 | 0.37 | 8.61 | -- | 1.48 | 0.572 | -- | -- | -0.0907 | 7.87 | 35.39 | 2431 | -- | -- |
| 177.13 | 0.622 | 8.67 | -0.524 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 66.52 | 0.382 | 8.62 | -- | 1.47 | -- | -- | -- | -0.129 | 7.82 | -- | -- | -- | -- |
| 181.94 | 0.628 | 8.65 | -- | -- | 0.465 | -- | -- | -0.0785 | -- | 35.4 | 3922 | -- | -- |
| 184.39 | 0.634 | 8.65 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.67 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 2 | 48.86 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 5 | 49.55 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 6 | 49.61 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 9 | 50.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 11 | 50.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 13 | 50.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 14 | 50.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 15 | 50.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 16 | 50.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 17 | 50.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 23 | 50.26 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 26 | 50.27 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 27 | 50.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 28 | 50.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 29 | 50.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 52 | 50.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 85 | 50.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 86 | 50.33 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 20 |
| 87 | 50.33 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 101 | 50.37 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 182 | 50.52 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 328 | 50.56 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 388 | 50.67 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 423 | 50.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 438 | 50.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 510 | 50.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 517 | 50.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 518 | 50.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 713 | 50.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 742 | 50.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 835 | 50.90 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 866 | 50.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 868 | 50.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 878 | 50.92 | radiation | 20 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 903 | 50.93 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 923 | 50.94 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 938 | 50.94 | radiation | 20 | 1440 | < th | dose dependent | sin | 0 | NA |
| 991 | 50.97 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 994 | 50.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |