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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0473800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0155) R2 : 0.0122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0773 (0.0326) R2dN8 : 0.0157 R2N8 : 0.0122
σ : 0.292
deviance : 39.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.4 0.287 2.88 0.0774 0.257 -0.222 -1.15 1.03 0.104 11.5 0.3 90 -- --
38.3 0.29 2.89 0.0138 0.202 -0.163 -0.0339 -- 0.0779 10.9 0.3 90 -- --
38.04 0.287 2.89 0.0181 0.281 -0.24 -- 0.111 0.0951 12 0.3 90 -- --
38.11 0.288 2.89 0.018 0.281 -0.24 -- -- 0.0956 12 0.2999 90 -- --
38.93 0.292 2.9 0.00332 -- -0.0332 -- 0.0287 0.0774 -- 0.3 90 -- --
38.85 0.292 2.9 0.00265 0.0379 -- -0.236 -- 0.0757 6.04 -- -- -- --
38.99 0.292 2.89 0.000536 0.0368 -- -- -- 0.0767 6.29 -- -- -- --
38.92 0.291 2.89 0.00262 -- -0.0367 -- -- 0.0786 -- 0.1902 89 -- --
38.12 0.288 2.89 -- 0.285 -0.244 -- -- 0.0941 12 0.2947 90 -- --
39.06 0.292 2.9 0.00152 -- -- -- -- 0.0774 -- -- -- -- --
38.99 0.292 2.89 -- 0.0368 -- -- -- 0.0766 6.29 -- -- -- --
38.92 0.291 2.89 -- -- -0.0365 -- -- 0.0785 -- 0.1921 89 -- --
39.06 0.292 2.9 -- -- -- -- -- 0.0773 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.15 humidity 90.0 10 < th dose independent rect. 4 1
4 34.21 atmosphere 1005.0 10 > th dose dependent rect. 4 1
5 34.22 humidity 90.0 90 < th dose dependent rect. 4 1
6 34.24 atmosphere 1005.0 30 > th dose independent rect. 4 1
10 34.26 wind 3.0 30 < th dose independent rect. 4 1
14 34.26 temperature 25.0 90 > th dose independent rect. 3 1
15 34.26 temperature 25.0 10 > th dose independent rect. 4 1
16 34.26 temperature 10.0 30 > th dose independent rect. 4 1
20 34.26 temperature 30.0 30 < th dose independent rect. 4 1
21 34.26 humidity 50.0 30 > th dose independent rect. 4 1
25 34.26 atmosphere 995.0 30 > th dose independent rect. 4 1
27 34.26 atmosphere 1010.0 30 < th dose independent rect. 4 1
29 34.26 radiation 1.0 30 < th dose independent rect. 4 1
34 34.26 precipitation 0.1 30 < th dose independent rect. 4 1
41 34.26 temperature 10.0 30 > th dose independent rect. 5 23
42 34.26 wind 5.0 30 < th dose dependent rect. 4 1
45 34.26 temperature 25.0 90 > th dose dependent rect. 3 1
46 34.26 temperature 25.0 10 > th dose dependent rect. 4 1
50 34.26 radiation 1.0 30 < th dose dependent rect. 4 1
55 34.26 precipitation 0.1 30 < th dose dependent rect. 4 1
61 34.27 wind 1.0 30 > th dose independent rect. 4 1
62 34.27 wind 7.0 1440 < th dose independent rect. 5 1
64 34.27 temperature 10.0 1440 > th dose independent rect. 5 1
67 34.27 temperature 30.0 1440 < th dose independent rect. 5 1
71 34.27 humidity 50.0 1440 > th dose independent rect. 5 1
81 34.27 atmosphere 995.0 1440 > th dose independent rect. 5 1
82 34.27 atmosphere 1015.0 1440 < th dose independent rect. 5 1
83 34.27 radiation 20.0 1440 < th dose independent rect. 5 1
92 34.27 temperature 10.0 1440 > th dose independent rect. 6 23
96 34.27 temperature 10.0 30 > th dose dependent rect. 4 1
98 34.27 temperature 30.0 30 < th dose dependent rect. 4 1
99 34.27 humidity 50.0 30 > th dose dependent rect. 4 1
104 34.29 atmosphere 1015.0 30 < th dose dependent rect. 4 1
118 34.36 wind 1.0 30 > th dose dependent rect. 4 1
141 34.37 humidity 90.0 10 < th dose dependent rect. 4 1
158 34.46 atmosphere 995.0 30 > th dose independent rect. 5 23
169 34.60 precipitation 0.1 30 < th dose independent rect. 5 23
170 34.60 precipitation 0.1 30 < th dose dependent rect. 5 23
184 35.03 wind 9.0 30 < th dose independent rect. 5 23
206 35.82 humidity 50.0 30 > th dose independent rect. 5 23
220 36.03 temperature 30.0 30 < th dose independent rect. 5 23
240 36.53 humidity 70.0 30 < th dose independent rect. 19 1
271 36.65 humidity 70.0 30 < th dose dependent rect. 19 1
292 36.70 temperature 25.0 90 > th dose dependent rect. 19 2
344 36.78 radiation 1.0 10 < th dose dependent rect. 4 10
347 36.80 radiation 30.0 720 < th dose independent rect. 5 4
375 36.88 atmosphere 1005.0 270 > th dose dependent rect. 1 1
376 36.89 radiation 1.0 10 < th dose independent rect. 4 10
390 36.94 wind 9.0 720 < th dose independent rect. 17 12
391 36.94 precipitation 0.1 720 < th dose independent rect. 17 12
400 36.94 precipitation 0.1 720 < th dose dependent rect. 17 12
403 36.96 wind 1.0 30 > th dose independent rect. 5 23
413 37.00 temperature 10.0 720 > th dose independent rect. 5 12
414 37.00 temperature 10.0 720 > th dose independent rect. 17 12
415 37.00 atmosphere 1015.0 720 < th dose independent rect. 5 12
416 37.00 radiation 30.0 720 < th dose independent rect. 17 12
441 37.02 atmosphere 995.0 720 > th dose independent rect. 5 12
450 37.05 humidity 50.0 270 > th dose independent rect. 5 12
451 37.05 precipitation 0.1 720 < th dose independent rect. 5 12
453 37.05 precipitation 0.1 720 < th dose dependent rect. 5 12
457 37.06 atmosphere 995.0 720 > th dose independent rect. 17 12
462 37.08 radiation 40.0 720 < th dose dependent rect. 17 12
463 37.09 temperature 25.0 10 > th dose independent rect. 19 11
470 37.11 temperature 30.0 90 > th dose independent rect. 18 1
520 37.14 atmosphere 1000.0 90 < th dose independent rect. 4 1
521 37.14 atmosphere 1000.0 10 < th dose independent rect. 5 1
532 37.14 atmosphere 1015.0 30 < th dose independent rect. 5 23
533 37.14 atmosphere 1000.0 90 < th dose dependent rect. 4 1
534 37.14 atmosphere 1000.0 10 < th dose dependent rect. 5 1
552 37.17 wind 1.0 30 < th dose independent rect. 17 1
563 37.17 humidity 50.0 720 > th dose independent rect. 17 12
564 37.17 radiation 30.0 720 < th dose independent rect. 21 12
565 37.17 wind 1.0 30 < th dose dependent rect. 17 1
583 37.18 humidity 50.0 720 > th dose independent rect. 21 20
584 37.18 humidity 90.0 90 < th dose dependent rect. 19 2
600 37.20 humidity 70.0 90 < th dose dependent rect. 17 1
610 37.21 atmosphere 1000.0 720 > th dose independent rect. 5 4
615 37.22 temperature 30.0 720 < th dose independent rect. 5 4
619 37.23 humidity 50.0 270 > th dose independent rect. 13 12
631 37.24 radiation 1.0 90 < th dose dependent rect. 7 22
633 37.25 wind 9.0 720 < th dose independent rect. 17 4
637 37.25 radiation 1.0 90 < th dose dependent rect. 13 16
661 37.28 precipitation 0.1 720 < th dose independent rect. 17 4
662 37.28 precipitation 0.1 720 < th dose independent rect. 9 20
668 37.28 precipitation 0.1 720 < th dose dependent rect. 17 4
669 37.28 precipitation 0.1 720 < th dose dependent rect. 9 20
683 37.29 atmosphere 1000.0 270 > th dose independent rect. 21 12
686 37.29 radiation 1.0 90 < th dose independent rect. 7 22
701 37.30 atmosphere 1000.0 720 > th dose independent rect. 21 4
704 37.30 radiation 1.0 90 < th dose independent rect. 12 17
707 37.30 radiation 1.0 90 < th dose dependent rect. 15 14
716 37.32 temperature 10.0 720 > th dose independent rect. 17 4
717 37.32 humidity 60.0 720 > th dose independent rect. 5 4
718 37.32 radiation 20.0 720 < th dose independent rect. 17 4
722 37.32 temperature 10.0 720 > th dose independent rect. 21 20
723 37.32 atmosphere 995.0 720 > th dose independent rect. 21 20
740 37.33 wind 9.0 720 < th dose independent rect. 5 4
742 37.33 temperature 10.0 720 > th dose independent rect. 5 4
745 37.33 atmosphere 1015.0 720 < th dose independent rect. 5 4
748 37.33 temperature 10.0 720 > th dose independent rect. 9 20
753 37.34 precipitation 0.1 720 < th dose independent rect. 17 20
758 37.34 precipitation 0.1 720 < th dose dependent rect. 17 20
760 37.35 humidity 50.0 720 > th dose independent rect. 13 4
764 37.36 precipitation 0.1 720 < th dose independent rect. 5 4
765 37.36 atmosphere 1000.0 90 > th dose independent rect. 5 14
766 37.36 radiation 1.0 90 < th dose independent rect. 15 14
770 37.36 precipitation 0.1 720 < th dose dependent rect. 5 4
771 37.36 radiation 1.0 90 < th dose dependent rect. 17 12
778 37.38 wind 1.0 720 > th dose independent rect. 17 4
780 37.38 atmosphere 995.0 720 > th dose independent rect. 17 4
781 37.38 atmosphere 1015.0 720 < th dose independent rect. 17 4
782 37.38 precipitation 0.1 720 < th dose independent rect. 1 4
783 37.38 wind 9.0 720 < th dose independent rect. 17 20
786 37.38 precipitation 0.1 720 < th dose dependent rect. 1 4
787 37.38 radiation 1.0 90 < th dose dependent rect. 1 23
788 37.39 temperature 25.0 1440 < th dose independent rect. 1 4
790 37.39 precipitation 0.1 720 < th dose independent rect. 13 4
793 37.39 precipitation 0.1 720 < th dose dependent rect. 13 4
800 37.40 wind 9.0 720 < th dose independent rect. 1 4
805 37.40 temperature 10.0 90 > th dose dependent rect. 19 10
806 37.40 radiation 1.0 90 < th dose dependent rect. 17 22
809 37.41 temperature 10.0 720 > th dose independent rect. 1 4
810 37.41 temperature 10.0 720 > th dose independent rect. 13 4
812 37.41 humidity 50.0 720 > th dose independent rect. 1 4
815 37.41 atmosphere 995.0 720 > th dose independent rect. 1 4
816 37.41 atmosphere 995.0 720 > th dose independent rect. 13 4
817 37.41 atmosphere 1015.0 720 < th dose independent rect. 13 4
818 37.41 radiation 20.0 720 < th dose independent rect. 1 4
822 37.41 temperature 10.0 720 > th dose independent rect. 5 20
823 37.41 temperature 10.0 720 > th dose independent rect. 17 20
824 37.41 radiation 40.0 720 < th dose dependent rect. 1 4
825 37.41 radiation 40.0 720 < th dose dependent rect. 17 4
831 37.42 wind 1.0 720 > th dose independent rect. 13 4
835 37.42 radiation 20.0 720 < th dose dependent rect. 1 4
837 37.42 temperature 20.0 30 > th dose dependent rect. 19 10
838 37.42 radiation 1.0 90 < th dose dependent rect. 15 23
872 37.44 radiation 1.0 720 < th dose independent rect. 1 4
874 37.44 radiation 1.0 90 < th dose independent rect. 17 12
876 37.44 atmosphere 1000.0 90 > th dose independent rect. 21 14
882 37.44 radiation 1.0 90 < th dose dependent rect. 3 18
888 37.44 radiation 1.0 90 < th dose dependent rect. 19 23
892 37.45 temperature 30.0 720 < th dose independent rect. 17 12
893 37.45 atmosphere 995.0 720 > th dose independent rect. 5 20
894 37.45 atmosphere 995.0 720 > th dose independent rect. 17 20
923 37.46 precipitation 0.1 720 < th dose independent rect. 21 20
924 37.46 radiation 1.0 90 < th dose independent rect. 19 22
925 37.46 radiation 40.0 30 < th dose independent rect. 5 23
926 37.46 radiation 1.0 90 < th dose dependent no NA NA
936 37.46 precipitation 0.1 720 < th dose dependent rect. 21 20
945 37.47 temperature 25.0 1440 < th dose independent rect. 1 1
948 37.47 precipitation 0.1 720 < th dose independent rect. 5 20
955 37.47 precipitation 0.1 720 < th dose dependent rect. 5 20
962 37.48 wind 9.0 720 < th dose independent rect. 5 12
975 37.49 atmosphere 995.0 720 > th dose independent rect. 9 20
981 37.50 humidity 50.0 720 > th dose independent rect. 17 4