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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0472100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ABC transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0622) R2 : 0.542
β1 : 1.4 (0.286) R2dD : 0.0593 R2D : 0.0817
β2 : 1.07 (0.126) R2dC : 0.0785 R2C : 0.0284
β3 : -1.3 (0.2) R2dE : 0.0809 R2E : -0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.27 (0.998) R2dD*E : 0.153 R2D*E : 0.296
γ1 : 1.49 (0.171) R2dN8 : 0.263 R2N8 : 0.104
σ : 0.927
deviance : 396.08
__
_____
C
peak time of C : 20.3
E
wheather : radiation
threshold : 10.34
memory length : 24109
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
396.94 0.936 5.58 1.35 1.07 -1.31 -0.94 -7.3 1.51 20.3 10.26 25581 -- --
434.48 0.971 5.39 2.43 1.09 -1.96 -1.39 -- 2.13 20.2 20.01 27153 -- --
396.08 0.927 5.61 1.4 1.07 -1.3 -- -7.27 1.49 20.3 10.34 24109 -- --
439.43 0.976 5.39 2.47 1.06 -1.98 -- -- 2.12 20 20.02 27269 -- --
456.24 0.995 5.58 1.16 -- -1.13 -- -7.81 1.37 -- 10.03 24349 -- --
551.01 1.1 5.53 2.33 1 -- -1.28 -- 1.42 20.2 -- -- -- --
555.46 1.1 5.53 2.37 1.02 -- -- -- 1.42 19.8 -- -- -- --
498.69 1.04 5.37 2.42 -- -1.95 -- -- 2.05 -- 20 27448 -- --
537.71 1.08 5.48 -- 0.92 -1.96 -- -- 1.66 19.9 36.97 27163 -- --
611.68 1.16 5.5 2.36 -- -- -- -- 1.41 -- -- -- -- --
703.14 1.24 5.59 -- 1 -- -- -- 1.16 20 -- -- -- --
581.52 1.12 5.48 -- -- -2.47 -- -- 1.52 -- 46.17 27433 -- --
757.98 1.29 5.56 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 386.32 humidity 80.0 14400 > th dose dependent rect. 24 1
5 388.67 humidity 80.0 14400 > th dose dependent rect. 23 3
7 388.93 humidity 90.0 14400 < th dose dependent rect. 22 3
21 392.18 radiation 10.0 43200 > th dose independent rect. 14 1
51 397.85 wind 5.0 4320 > th dose dependent rect. 15 6
52 397.99 humidity 80.0 14400 > th dose independent rect. 21 3
61 399.36 humidity 80.0 14400 > th dose dependent rect. 22 9
77 400.51 wind 7.0 4320 > th dose independent rect. 15 6
80 400.89 temperature 25.0 43200 > th dose dependent rect. 7 1
81 401.05 humidity 80.0 14400 < th dose independent rect. 21 2
83 401.30 radiation 10.0 43200 < th dose dependent rect. 11 1
87 401.43 precipitation 0.1 43200 > th dose dependent rect. 2 15
101 401.84 wind 7.0 4320 < th dose independent rect. 15 6
102 401.84 precipitation 0.1 43200 < th dose independent rect. 2 15
104 401.84 precipitation 0.1 43200 < th dose dependent rect. 2 15
105 401.89 precipitation 0.1 43200 > th dose independent rect. 2 15
106 401.89 precipitation 0.1 43200 < th dose independent rect. 22 19
107 401.89 precipitation 0.1 43200 < th dose dependent rect. 22 19
112 402.00 precipitation 0.1 43200 > th dose independent rect. 22 19
119 402.18 wind 9.0 43200 > th dose dependent rect. 15 2
126 402.43 radiation 10.0 43200 > th dose independent rect. 13 17
140 402.51 radiation 20.0 14400 > th dose independent rect. 8 1
146 402.65 precipitation 0.1 43200 > th dose dependent rect. 23 18
173 402.88 wind 5.0 4320 > th dose dependent rect. 17 2
179 402.99 humidity 70.0 43200 > th dose dependent rect. 12 2
183 403.12 humidity 80.0 43200 > th dose independent rect. 13 15
203 403.55 radiation 10.0 14400 > th dose independent rect. 6 8
213 403.74 humidity 70.0 43200 > th dose dependent rect. 9 8
214 403.75 temperature 25.0 43200 > th dose independent rect. 6 1
229 403.81 humidity 70.0 43200 > th dose dependent rect. 9 6
232 403.85 temperature 25.0 43200 < th dose independent rect. 6 1
233 403.86 wind 9.0 43200 > th dose independent rect. 15 2
263 403.96 atmosphere 1010.0 14400 < th dose independent rect. 11 1
268 404.04 atmosphere 1010.0 14400 > th dose independent rect. 11 1
284 404.13 precipitation 0.1 43200 < th dose independent rect. 19 13
286 404.13 precipitation 0.1 43200 < th dose dependent rect. 19 13
293 404.32 precipitation 0.1 43200 > th dose independent rect. 19 13
305 404.47 humidity 80.0 43200 < th dose independent rect. 13 15
319 404.67 temperature 25.0 43200 > th dose dependent rect. 20 1
325 404.76 humidity 80.0 43200 > th dose independent rect. 21 21
328 404.79 radiation 10.0 43200 > th dose independent sin 16 NA
330 404.82 temperature 25.0 43200 > th dose dependent rect. 20 14
365 405.15 precipitation 0.1 43200 > th dose dependent sin 4 NA
368 405.19 precipitation 0.1 43200 > th dose dependent sin 7 NA
393 405.28 precipitation 0.1 43200 > th dose independent rect. 19 19
396 405.29 precipitation 0.1 43200 < th dose independent rect. 19 19
397 405.29 precipitation 0.1 43200 < th dose dependent rect. 19 19
399 405.30 humidity 50.0 43200 > th dose dependent rect. 19 6
411 405.45 radiation 10.0 43200 < th dose dependent rect. 14 2
422 405.57 wind 1.0 43200 < th dose dependent rect. 2 3
425 405.60 precipitation 0.1 43200 < th dose independent sin 9 NA
426 405.60 precipitation 0.1 43200 < th dose dependent sin 9 NA
428 405.62 precipitation 0.1 43200 < th dose independent rect. 19 21
430 405.62 precipitation 0.1 43200 < th dose dependent rect. 19 21
434 405.67 precipitation 0.1 43200 > th dose independent rect. 19 21
459 405.82 precipitation 0.1 43200 > th dose independent sin 9 NA
499 406.06 temperature 25.0 43200 > th dose independent rect. 22 1
513 406.12 radiation 10.0 14400 > th dose independent sin 7 NA
528 406.22 temperature 25.0 43200 > th dose dependent sin 9 NA
543 406.34 humidity 80.0 43200 > th dose independent rect. 8 10
599 406.58 temperature 25.0 43200 < th dose independent rect. 22 1
609 406.66 precipitation 0.1 43200 > th dose dependent rect. 21 11
621 406.76 humidity 80.0 43200 > th dose independent rect. 8 23
636 406.83 temperature 25.0 43200 > th dose independent rect. 20 13
651 406.89 radiation 10.0 43200 < th dose dependent rect. 11 5
663 406.98 humidity 80.0 43200 < th dose independent rect. 9 9
665 406.99 radiation 10.0 14400 > th dose independent rect. 10 2
718 407.26 temperature 25.0 43200 < th dose independent rect. 20 13
837 407.70 radiation 10.0 43200 > th dose independent rect. 17 13
869 407.85 temperature 25.0 43200 > th dose independent sin 10 NA
870 407.85 humidity 80.0 43200 < th dose independent rect. 21 21
876 407.87 humidity 70.0 43200 > th dose dependent rect. 16 1
905 407.97 humidity 80.0 43200 > th dose independent rect. 9 2
907 407.97 temperature 25.0 43200 > th dose independent rect. 20 8
909 407.98 humidity 80.0 43200 > th dose independent no NA NA
942 408.07 wind 1.0 43200 > th dose independent rect. 2 3
955 408.10 wind 1.0 43200 < th dose independent rect. 2 3