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Os09g0471900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0233) R2 : 0.577
β1 : 1.1 (0.0853) R2dD : 0.161 R2D : 0.145
β2 : 1.31 (0.0606) R2dC : 0.433 R2C : 0.42
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0691 (0.0497) R2dN8 : 0.00241 R2N8 : -0.00754
σ : 0.438
deviance : 87.38
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.14 0.407 10.2 1.08 1.23 0.909 0.367 1.16 0.0348 18.6 7.908 71 -- --
77.64 0.41 10.2 1.11 1.23 0.817 0.25 -- 0.0417 18.5 7.437 69 -- --
75.48 0.405 10.2 1.07 1.23 0.901 -- 1.11 0.036 18.6 7.899 70 -- --
77.79 0.411 10.2 1.1 1.23 0.83 -- -- 0.0407 18.6 7.12 69 -- --
116.82 0.503 10.2 1.01 -- 1.31 -- -0.0791 -0.0731 -- -9.876 625 -- --
86.83 0.437 10.2 1.1 1.3 -- 0.476 -- 0.067 17.3 -- -- -- --
87.38 0.438 10.2 1.1 1.31 -- -- -- 0.0691 17.4 -- -- -- --
116.81 0.503 10.2 1 -- 1.3 -- -- -0.0755 -- -15.76 625 -- --
109.63 0.49 10.3 -- 1.25 0.775 -- -- -0.0462 18.5 7.12 69 -- --
176.38 0.621 10.2 1.06 -- -- -- -- 0.0367 -- -- -- -- --
119.5 0.511 10.3 -- 1.29 -- -- -- -0.0538 17.4 -- -- -- --
143.39 0.558 10.3 -- -- 1.33 -- -- -0.189 -- -10.99 625 -- --
205.98 0.67 10.2 -- -- -- -- -- -0.0808 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.04 wind 5.0 270 < th dose independent rect. 3 3
2 61.62 wind 5.0 270 < th dose independent rect. 2 5
4 62.11 precipitation 0.1 270 < th dose independent rect. 3 3
5 62.11 precipitation 0.1 270 < th dose dependent rect. 3 3
6 62.32 wind 5.0 270 < th dose independent rect. 4 1
7 62.43 wind 9.0 270 < th dose independent rect. 6 21
10 62.66 wind 9.0 10 < th dose independent rect. 9 19
13 62.73 wind 9.0 10 < th dose dependent rect. 4 5
16 62.93 precipitation 0.1 10 < th dose independent rect. 4 5
18 62.93 precipitation 0.1 10 < th dose dependent rect. 4 5
22 63.07 radiation 30.0 90 < th dose independent rect. 3 6
24 63.12 wind 9.0 270 < th dose dependent rect. 3 3
25 63.14 atmosphere 1010.0 270 < th dose independent rect. 3 3
26 63.14 precipitation 0.1 270 < th dose independent rect. 2 5
27 63.14 precipitation 0.1 270 < th dose dependent rect. 2 5
29 63.16 temperature 10.0 270 > th dose independent rect. 3 3
31 63.16 temperature 30.0 270 < th dose independent rect. 3 3
32 63.16 humidity 50.0 270 > th dose independent rect. 3 3
35 63.16 atmosphere 995.0 270 > th dose independent rect. 3 3
37 63.16 radiation 20.0 270 < th dose independent rect. 3 3
40 63.16 temperature 10.0 270 > th dose independent rect. 6 21
48 63.20 temperature 10.0 10 > th dose independent rect. 4 5
50 63.20 temperature 30.0 10 < th dose independent rect. 4 5
51 63.20 humidity 50.0 10 > th dose independent rect. 4 5
53 63.20 atmosphere 995.0 10 > th dose independent rect. 4 5
54 63.20 atmosphere 1015.0 10 < th dose independent rect. 4 5
55 63.20 temperature 10.0 10 > th dose independent rect. 9 19
56 63.26 temperature 10.0 10 > th dose dependent rect. 4 5
67 63.31 radiation 40.0 270 < th dose dependent rect. 3 3
78 63.48 precipitation 0.1 270 < th dose independent rect. 4 1
79 63.48 precipitation 0.1 270 < th dose dependent rect. 4 1
81 63.56 wind 9.0 270 < th dose independent rect. 5 23
84 63.57 temperature 10.0 270 > th dose dependent rect. 3 3
91 63.64 wind 9.0 270 < th dose dependent rect. 4 1
114 63.96 temperature 10.0 90 > th dose dependent rect. 8 7
127 63.98 radiation 1.0 270 < th dose dependent rect. 4 1
129 63.99 temperature 10.0 270 > th dose independent rect. 4 1
131 63.99 temperature 30.0 270 < th dose independent rect. 4 1
132 63.99 humidity 50.0 270 > th dose independent rect. 4 1
135 63.99 atmosphere 995.0 270 > th dose independent rect. 4 1
136 63.99 atmosphere 1010.0 270 < th dose independent rect. 4 1
138 63.99 radiation 20.0 270 < th dose independent rect. 4 1
141 63.99 temperature 10.0 270 > th dose independent rect. 5 23
148 64.03 radiation 40.0 270 < th dose dependent rect. 4 1
152 64.07 precipitation 0.1 30 < th dose independent rect. 9 19
153 64.07 precipitation 0.1 30 < th dose dependent rect. 9 19
154 64.08 radiation 30.0 270 < th dose dependent rect. 2 6
162 64.17 radiation 1.0 270 < th dose independent rect. 4 1
172 64.19 precipitation 0.1 270 < th dose independent rect. 6 21
173 64.19 precipitation 0.1 270 < th dose dependent rect. 6 21
190 64.40 temperature 15.0 90 > th dose independent rect. 15 17
192 64.42 atmosphere 995.0 10 > th dose dependent rect. 4 5
205 64.49 atmosphere 1000.0 90 > th dose dependent rect. 3 5
214 64.63 atmosphere 995.0 10 > th dose independent rect. 9 19
274 64.92 humidity 50.0 270 > th dose dependent rect. 4 1
276 64.97 humidity 50.0 270 > th dose dependent rect. 3 3
280 65.01 atmosphere 1000.0 270 > th dose dependent rect. 4 1
287 65.05 temperature 15.0 90 > th dose independent rect. 8 7
291 65.08 wind 9.0 90 < th dose independent rect. 8 7
292 65.08 precipitation 0.1 90 < th dose independent rect. 8 7
294 65.08 precipitation 0.1 90 < th dose dependent rect. 8 7
297 65.11 precipitation 0.1 90 < th dose independent rect. 15 17
299 65.11 precipitation 0.1 90 < th dose dependent rect. 15 17
312 65.20 precipitation 0.1 270 < th dose independent rect. 3 15
313 65.20 temperature 10.0 270 > th dose dependent rect. 4 1
315 65.20 precipitation 0.1 270 < th dose dependent rect. 3 15
320 65.24 atmosphere 1015.0 90 < th dose independent rect. 8 7
322 65.26 wind 1.0 270 > th dose independent rect. 2 5
336 65.34 temperature 10.0 10 > th dose dependent rect. 9 6
338 65.35 radiation 40.0 90 < th dose independent rect. 15 17
344 65.38 humidity 50.0 270 > th dose dependent rect. 18 8
358 65.52 atmosphere 995.0 90 > th dose independent rect. 15 17
370 65.60 atmosphere 995.0 90 > th dose independent rect. 8 7
388 65.68 radiation 1.0 270 < th dose dependent rect. 18 9
424 65.75 wind 9.0 90 < th dose independent rect. 15 17
427 65.76 wind 1.0 90 > th dose independent rect. 8 7
429 65.78 radiation 1.0 270 < th dose independent rect. 18 9
433 65.79 radiation 1.0 90 > th dose independent rect. 8 7
434 65.79 humidity 50.0 30 > th dose independent rect. 9 19
460 65.90 radiation 1.0 30 > th dose independent rect. 5 4
473 65.91 atmosphere 995.0 270 > th dose independent rect. 18 9
485 65.94 temperature 10.0 270 > th dose independent rect. 18 9
486 65.94 humidity 50.0 270 > th dose independent rect. 18 9
490 65.94 temperature 10.0 270 > th dose independent rect. 3 15
491 65.94 atmosphere 1015.0 270 < th dose independent rect. 3 15
493 65.94 temperature 10.0 270 > th dose dependent rect. 9 1
499 65.96 wind 9.0 270 < th dose independent rect. 18 9
502 65.98 atmosphere 995.0 270 > th dose independent rect. 6 21
506 66.02 wind 1.0 270 > th dose independent rect. 3 3
559 66.20 humidity 50.0 270 > th dose dependent rect. 2 5
560 66.21 humidity 50.0 270 > th dose independent rect. 7 19
561 66.22 humidity 50.0 270 > th dose independent rect. 6 21
566 66.23 wind 9.0 270 < th dose dependent rect. 7 7
569 66.24 temperature 15.0 10 > th dose independent rect. 15 18
591 66.31 humidity 90.0 90 < th dose independent rect. 8 7
615 66.37 atmosphere 1015.0 10 < th dose independent rect. 9 19
639 66.50 temperature 30.0 270 < th dose independent rect. 18 9
677 66.64 atmosphere 1005.0 270 > th dose independent rect. 3 3
683 66.66 precipitation 0.1 10 < th dose independent rect. 15 18
686 66.66 precipitation 0.1 10 < th dose dependent rect. 15 18
698 66.69 radiation 1.0 90 < th dose dependent sin 12 NA
748 66.78 atmosphere 1005.0 30 > th dose independent rect. 4 5
757 66.81 temperature 10.0 270 > th dose dependent rect. 8 3
812 66.98 atmosphere 1005.0 270 > th dose independent rect. 4 1
814 66.99 wind 9.0 10 < th dose independent rect. 9 7
817 67.00 precipitation 0.1 270 < th dose independent rect. 18 9
821 67.00 precipitation 0.1 270 < th dose dependent rect. 18 9
885 67.16 temperature 10.0 1440 > th dose independent rect. 5 5
888 67.16 atmosphere 995.0 1440 > th dose independent rect. 5 5
889 67.16 atmosphere 1015.0 1440 < th dose independent rect. 5 5
891 67.16 temperature 10.0 10 > th dose independent rect. 9 6
893 67.16 atmosphere 995.0 10 > th dose independent rect. 9 6
894 67.16 atmosphere 1015.0 10 < th dose independent rect. 9 6
895 67.16 precipitation 0.1 10 < th dose independent rect. 9 6
897 67.16 temperature 10.0 1440 > th dose independent rect. 10 19
900 67.16 precipitation 0.1 10 < th dose dependent rect. 9 6
904 67.19 atmosphere 995.0 10 > th dose independent rect. 15 18
907 67.20 radiation 1.0 10 > th dose independent rect. 9 6
914 67.21 radiation 40.0 270 < th dose independent rect. 11 20
946 67.27 temperature 10.0 10 > th dose dependent rect. 9 19
956 67.30 radiation 1.0 90 > th dose independent sin 12 NA
979 67.34 wind 9.0 270 < th dose independent rect. 3 15