Os09g0471800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0471800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.67 | 0.832 | 6.15 | 4.15 | 0.602 | -4.22 | -0.998 | -8.57 | 0.795 | 14.1 | 0.9724 | 4362 | -- | -- |
| 361.05 | 0.885 | 6.34 | 3.2 | 0.207 | -3.24 | -1.31 | -- | 0.426 | 11.5 | 2.787 | 7460 | -- | -- |
| 291.97 | 0.796 | 6.11 | 3.98 | 0.826 | -4.2 | -- | -8.32 | 0.756 | 13.4 | 0.9629 | 11547 | -- | -- |
| 347.25 | 0.868 | 6.41 | 2.73 | 0.311 | -3.52 | -- | -- | 0.302 | 13.7 | 3.124 | 10309 | -- | -- |
| 328.48 | 0.844 | 6.21 | 4.08 | -- | -4.1 | -- | -8.22 | 0.856 | -- | 1.398 | 7339 | -- | -- |
| 503.85 | 1.05 | 6.22 | 3.49 | 0.759 | -- | -0.403 | -- | 1.08 | 13 | -- | -- | -- | -- |
| 504.38 | 1.05 | 6.22 | 3.47 | 0.759 | -- | -- | -- | 1.08 | 12.7 | -- | -- | -- | -- |
| 309.77 | 0.82 | 6.5 | 2.14 | -- | -3.66 | -- | -- | -0.0582 | -- | 2.927 | 16225 | -- | -- |
| 285.32 | 0.787 | 6.56 | -- | 0.795 | -3.65 | -- | -- | -0.434 | 12.9 | 1.388 | 41793 | -- | -- |
| 540.42 | 1.09 | 6.23 | 3.44 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 821.87 | 1.34 | 6.31 | -- | 0.706 | -- | -- | -- | 0.693 | 12.5 | -- | -- | -- | -- |
| 313.6 | 0.825 | 6.56 | -- | -- | -3.79 | -- | -- | -0.428 | -- | 1.641 | 46474 | -- | -- |
| 853.18 | 1.36 | 6.32 | -- | -- | -- | -- | -- | 0.684 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 274.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 2 | 274.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 6 | 274.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 12 | 275.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 13 | 276.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 23 | 276.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 57 | 277.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 68 | 277.83 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 86 | 278.27 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 111 | 278.84 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 116 | 279.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 119 | 279.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 129 | 279.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 147 | 280.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 149 | 280.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 176 | 280.59 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 177 | 280.61 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 195 | 280.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 229 | 281.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 244 | 281.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 245 | 281.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 264 | 282.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 269 | 282.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 270 | 282.33 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 298 | 282.95 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 325 | 283.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 327 | 283.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 336 | 283.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 378 | 283.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 380 | 283.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 463 | 284.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 503 | 284.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 552 | 285.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 591 | 285.40 | radiation | 1 | 14400 | > th | dose independent | sin | 22 | NA |
| 639 | 285.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 675 | 285.58 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 678 | 285.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 22 |
| 727 | 285.66 | radiation | 1 | 14400 | < th | dose independent | sin | 23 | NA |
| 798 | 286.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 799 | 286.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 21 |
| 808 | 286.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 822 | 286.11 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 827 | 286.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 849 | 286.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 870 | 286.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 884 | 286.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 908 | 286.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 922 | 286.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |