Os09g0471500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0471500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 404.68 | 0.945 | 8.12 | -0.4 | 1.67 | 4.78 | 0.146 | -3.96 | 0.172 | 4.82 | -6.305 | 6035 | -- | -- |
| 402.1 | 0.934 | 8.1 | -0.368 | 1.61 | 5.12 | 0.27 | -- | -0.174 | 4.74 | 0.9568 | 11630 | -- | -- |
| 404.71 | 0.937 | 8.12 | -0.402 | 1.68 | 4.77 | -- | -3.97 | 0.167 | 4.83 | 10.08 | 6059 | -- | -- |
| 401.74 | 0.934 | 8.1 | -0.422 | 1.56 | 5.21 | -- | -- | -0.2 | 4.83 | 1.956 | 11514 | -- | -- |
| 527.53 | 1.07 | 8.12 | -0.384 | -- | 5 | -- | -3.92 | 0.253 | -- | 7.414 | 5568 | -- | -- |
| 844.32 | 1.36 | 7.71 | 2.91 | 1.69 | -- | 0.276 | -- | 1.55 | 4.68 | -- | -- | -- | -- |
| 844.52 | 1.36 | 7.71 | 2.9 | 1.69 | -- | -- | -- | 1.54 | 4.68 | -- | -- | -- | -- |
| 524.49 | 1.07 | 8.12 | -0.421 | -- | 5.37 | -- | -- | -0.176 | -- | 7.639 | 11292 | -- | -- |
| 404.46 | 0.937 | 8.07 | -- | 1.53 | 4.97 | -- | -- | -0.0706 | 4.93 | 5.222 | 11322 | -- | -- |
| 996.83 | 1.48 | 7.73 | 2.97 | -- | -- | -- | -- | 1.59 | -- | -- | -- | -- | -- |
| 1066.81 | 1.53 | 7.78 | -- | 1.75 | -- | -- | -- | 1.22 | 4.63 | -- | -- | -- | -- |
| 527.3 | 1.07 | 8.1 | -- | -- | 5.11 | -- | -- | -0.0606 | -- | 7.788 | 11275 | -- | -- |
| 1229.29 | 1.64 | 7.8 | -- | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 357.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 6 | 361.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 9 | 362.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 12 | 364.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 17 | 366.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 28 | 366.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 30 | 367.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 31 | 367.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 42 | 367.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 368.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 67 | 368.22 | radiation | 1 | 14400 | > th | dose independent | sin | 3 | NA |
| 90 | 368.64 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 129 | 370.80 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 164 | 372.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 168 | 373.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 178 | 373.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 179 | 373.18 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 253 | 373.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 255 | 373.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 265 | 374.13 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 266 | 374.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 267 | 374.25 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 291 | 374.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 313 | 375.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 365 | 376.48 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 367 | 376.73 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 369 | 376.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 370 | 376.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 371 | 376.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 372 | 376.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 384 | 376.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 21 |
| 389 | 376.80 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 398 | 376.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 429 | 376.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 439 | 377.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 441 | 377.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 451 | 377.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 469 | 377.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 473 | 378.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 508 | 378.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 511 | 378.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 520 | 378.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 524 | 378.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 534 | 379.29 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 540 | 379.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 16 |
| 556 | 379.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 21 |
| 562 | 379.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 574 | 380.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 576 | 380.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 604 | 380.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 11 |
| 610 | 380.43 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 614 | 380.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 624 | 380.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 22 |
| 626 | 380.73 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 630 | 380.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 637 | 380.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 641 | 380.80 | radiation | 1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 656 | 380.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 657 | 380.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 668 | 380.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 677 | 381.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 689 | 381.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 704 | 381.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 720 | 381.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 757 | 381.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 770 | 381.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 773 | 381.93 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 774 | 381.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 804 | 382.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 806 | 382.14 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 821 | 382.24 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 847 | 382.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 863 | 382.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 920 | 383.80 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 925 | 383.83 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 930 | 383.88 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 947 | 384.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 951 | 384.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 955 | 384.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 14 |
| 956 | 384.20 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 974 | 384.34 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 980 | 384.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 990 | 384.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 15 |